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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dokland, T."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Dubowvirus dv80alpha (10)
	Staphylococcus phage Andhra (4)
	Sinsheimervirus phiX174 (3)
	Staphylococcus aureus (3)
	Schizosaccharomyces pombe (2)
	Enterobacteria phage P4 (1)
	Equine arteritis virus (1)
	Escherichia phage alpha3 (1)
	Kunjin virus (STRAIN MRM61C) (1)
	Norwalk virus (1)

More...

Taxonomy

	Duplodnaviria (16)
	Riboviria (4)
	Bacteria (3)
	Monodnaviria (3)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (17)
	X-RAY DIFFRACTION (9)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (27)
	DNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (10)
	4.0 - 4.5 (2)
	> 4.5 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (6)
	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (13)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Icosahedral (13)
	Cyclic (8)
	Asymmetric (5)
	Dihedral (1)

SCOP Classification

	All alpha proteins (5)
	All beta proteins (4)
	Alpha and beta proteins (a+b) (2)
	Artifacts (1)

AllSelected

1 to 25 of 27 Structures

Page 1 of 2

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1AL0 \| pdb_00001al0	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1997) Nature 389: 308-313

Released	1998-01-28
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	CAPSID PROTEIN GPF (protein) SCAFFOLDING PROTEIN GPB (protein) SCAFFOLDING PROTEIN GPD (protein) SPIKE PROTEIN GPG (protein)

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1CD3 \| pdb_00001cd3	Download File View File

PROCAPSID OF BACTERIOPHAGE PHIX174

Rossmann, M.G., Dokland, T.

(1999) J Mol Biology 288: 595-608

Released	1999-04-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Sinsheimervirus phiX174
Macromolecule	PROTEIN (CAPSID PROTEIN GPF) (protein) PROTEIN (SCAFFOLDING PROTEIN GPB) (protein) PROTEIN (SCAFFOLDING PROTEIN GPD) (protein) PROTEIN (SPIKE PROTEIN GPG) (protein)

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1IHM \| pdb_00001ihm	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF NORWALK VIRUS CAPSID

Prasad, B.V., Hardy, M.E., Dokland, T., Bella, J., Rossmann, M.G., Estes, M.K.

(1999) Science 286: 287-290

Released	2001-05-16
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Norwalk virus
Macromolecule	capsid protein (protein)

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1P2X \| pdb_00001p2x	Download File View File

CRYSTAL STRUCTURE OF THE CALPONIN-HOMOLOGY DOMAIN OF RNG2 FROM SCHIZOSACCHAROMYCES POMBE

Wang, C.-H., Balasubramanian, M.K., Dokland, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1396-1403

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Ras GTPase-activating-like protein (protein)
Unique Ligands	BR

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1P5S \| pdb_00001p5s	Download File View File

STRUCTURE AND FUNCTION OF THE CALPONIN-HOMOLOGY DOMAIN OF AN IQGAP PROTEIN FROM SCHIZOSACCHAROMYCES POMBE

Wang, C.H., Balasubramanian, M.K., Dokland, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1396-1403

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Ras GTPase-activating-like protein rng2 (protein)
Unique Ligands	HG

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1P65 \| pdb_00001p65	Download File View File

Crystal structure of the nucleocapsid protein of porcine reproductive and respiratory syndrome virus (PRRSV)

Doan, D.N.P., Dokland, T.

(2003) Structure 11: 1445-1451

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Porcine reproductive and respiratory syndrome virus
Macromolecule	nucleocapsid protein (protein)

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1RB8 \| pdb_00001rb8	Download File View File

The phiX174 DNA binding protein J in two different capsid environments.

Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.

(2004) J Mol Biology 337: 1109-1122

Released	2004-04-13
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia phage alpha3 Sinsheimervirus phiX174
Macromolecule	Capsid protein (protein) Major spike protein (protein) Small core protein (protein) DNA (5'-D(PCPAPAPA)-3') (nucleic acid)
Unique Ligands	DC

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1SFK \| pdb_00001sfk	Download File View File

Core (C) protein from West Nile Virus, subtype Kunjin

Dokland, T., Walsh, M., Mackenzie, J.M., Khromykh, A.A., Ee, K.-H., Wang, S.

(2004) Structure 12: 1157-1163

Released	2004-08-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Kunjin virus (STRAIN MRM61C)
Macromolecule	Core protein (protein)
Unique Ligands	CA, CL, PG4, PO4

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2I9F \| pdb_00002i9f	Download File View File

Structure of the equine arterivirus nucleocapsid protein

Deshpande, A., Wang, S., Walsh, M., Dokland, T.

(2007) Acta Crystallogr D Biol Crystallogr 63: 581-586

Released	2007-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equine arteritis virus
Macromolecule	Nucleocapsid (protein)
Unique Ligands	CL, DTT, GOL, NA

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2L8T \| pdb_00002l8t	Download File View File

Staphylococcus aureus pathogenicity island 1 protein gp6, an internal scaffold in size determination

Dearborn, A.D., Spilman, M.S., Damle, P.K., Chang, J.R., Monroe, E.B., Saad, J.S., Christie, G.E., Dokland, T.

(2011) J Mol Biology 412: 710-722

Released	2011-08-17
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Transposon Tn557 toxic shock syndrome toxin-1 (protein)

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6B0X \| pdb_00006b0x	Download File View File

Capsid protein and C-terminal part of scaffolding protein in the Staphylococcus aureus phage 80alpha procapsid

Kizziah, J.L., Dearborn, A.D., Dokland, T.

(2017) Elife 6:

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Dubowvirus dv80alpha
Macromolecule	Major head protein (protein) Scaffold protein (protein)

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6B23 \| pdb_00006b23	Download File View File

Capsid protein and C-terminal part of CpmB protein in the Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid

Kizziah, J.L., Dearborn, A.D., Dokland, T.

(2017) Elife 6:

Released	2017-10-18
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Dubowvirus dv80alpha Staphylococcus aureus
Macromolecule	Capsid morphogenesis B protein (protein) Major head protein (protein)

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6C21 \| pdb_00006c21	Download File View File

Capsid protein in the Staphylococcus aureus phage 80alpha mature capsid

Kizziah, J.L., Dearborn, A.D., Dokland, T.

(2017) Viruses 9:

Released	2018-01-17
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Dubowvirus dv80alpha
Macromolecule	Major head protein (protein)

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6C22 \| pdb_00006c22	Download File View File

Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid

Kizziah, J.L., Dearborn, A.D., Dokland, T.

(2017) Viruses 9:

Released	2018-01-17
Method	ELECTRON MICROSCOPY 8.4 Å
Organisms	Dubowvirus dv80alpha
Macromolecule	Major head protein (protein)

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6V8I \| pdb_00006v8i	Download File View File

Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate

Kizziah, J.L., Dokland, T.

(2020) PLoS Pathog 16: e1008314-e1008314

Released	2020-03-04
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Dubowvirus dv80alpha
Macromolecule	Unique protein chains: 7
Unique Ligands	FE

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7JW1 \| pdb_00007jw1	Download File View File

Satellite phage P4 procapsid including size determination (Sid) protein

Kizziah, J.L., Dokland, T.

(2020) Viruses 12:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.19 Å
Organisms	Enterobacteria phage P4 Peduovirus P2
Macromolecule	Major capsid protein gpN (protein) Size determination protein Sid (protein)

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7RWZ \| pdb_00007rwz	Download File View File

SaPIbov5 procapsid structure including size redirecting protein Ccm

Hawkins, N.C., Kizziah, J.L., Dokland, T.

(2021) Nat Commun 12: 6408-6408

Released	2021-11-17
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Staphylococcus aureus
Macromolecule	Cos capsid morphogenesis protein (Ccm) (protein) Major capsid protein (protein)

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8EGR \| pdb_00008egr	Download File View File

Upper tail structure of Staphylococcus phage Andhra

Kizziah, J.L., Hawkins, N.C., Dokland, T.

(2022) Sci Adv 8: eade0459-eade0459

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Staphylococcus phage Andhra
Macromolecule	SGNH_hydro domain-containing protein (protein) Upper collar protein (protein) gp15, receptor-binding protein, tail fiber (protein) gp16, tail stem protein (protein) gp20, portal-proximal core protein (protein)

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8EGS \| pdb_00008egs	Download File View File

Tail knob structure of Staphylococcus phage Andhra

Kizziah, J.L., Hawkins, N.C., Dokland, T.

(2022) Sci Adv 8: eade0459-eade0459

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.92 Å
Organisms	Staphylococcus phage Andhra
Macromolecule	Lower collar protein (protein) Major tail protein (protein)

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8EGT \| pdb_00008egt	Download File View File

Capsid structure of Staphylococcus phage Andhra

Hawkins, N.C., Kizziah, J.L., Dokland, T.

(2022) Sci Adv 8: eade0459-eade0459

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Staphylococcus phage Andhra
Macromolecule	Major capsid protein (protein) gp19, capsid lining protein (protein)

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8EJ5 \| pdb_00008ej5	Download File View File

Tail tip structure of Staphylococcus phage Andhra

Kizziah, J.L., Hawkins, N.C., Dokland, T.

(2022) Sci Adv 8: eade0459-eade0459

Released	2022-12-14
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Staphylococcus phage Andhra
Macromolecule	gp1, tail tip protein (protein) gp10, tail tip lysin (spike) (protein)