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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gilbert, R.J.C."

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	Homo sapiens (37)
	Mus musculus (31)
	Lama glama (17)
	Xenopus tropicalis (9)
	Aequorea victoria (4)
	Toxoplasma gondii (4)
	Eisenia fetida (3)
	Clostridium perfringens (2)
	Danio rerio (2)
	Thermococcus kodakarensis (2)

More...

Taxonomy

	Eukaryota (84)
	Riboviria (3)
	Archaea (2)
	Bacteria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (66)
	ELECTRON MICROSCOPY (25)

Polymer Entity Type

	Protein (91)
	RNA (5)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (8)
	2.0 - 2.5 (18)
	2.5 - 3.0 (25)
	3.0 - 3.5 (17)
	3.5 - 4.0 (12)
	4.0 - 4.5 (3)
	> 4.5 (5)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (10)
	2010 - 2014 (31)
	2015 - 2019 (6)
	2020 - 2024 (32)
	2025 - 2029 (11)

Enzyme Classification Name

	Transferases (21)
	Hydrolases (18)
	Isomerases (14)
	Ligases (14)

Membrane Protein Annotation

	OPM (5)
	PDBTM (5)
	MemProtMD (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (54)
	Cyclic (32)
	Helical (4)
	Dihedral (1)

SCOP Classification

	Small proteins (8)
	All beta proteins (5)
	Artifacts (6)
	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 91 Structures

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1OEB \| pdb_00001oeb	Download File View File

Mona/Gads SH3C domain

Harkiolaki, M., Lewitzky, M., Gilbert, R.J.C., Jones, E.Y., Bourette, R.P., Mouchiroud, G., Sondermann, H., Moarefi, I., Feller, S.M.

(2003) EMBO J 22: 2571

Released	2003-04-02
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Mus musculus
Macromolecule	GRB2-RELATED ADAPTOR PROTEIN 2 (protein) LYMPHOCYTE CYTOSOLIC PROTEIN 2 (protein)
Unique Ligands	CD

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1YJD \| pdb_00001yjd	Download File View File

Crystal structure of human CD28 in complex with the Fab fragment of a mitogenic antibody (5.11A1)

Evans, E.J., Esnouf, R.M., Manso-Sancho, R., Gilbert, R.J.C., James, J.R., Sorensen, P., Stuart, D.I., Davis, S.J.

(2005) Nat Immunol 6: 271-279

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Fab fragment of 5.11A1 antibody heavy chain (protein) Fab fragment of 5.11A1 antibody light chain (protein) T-cell-specific surface glycoprotein CD28 (protein)
Unique Ligands	NAG

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2BK1 \| pdb_00002bk1	Download File View File

The pore structure of pneumolysin, obtained by fitting the alpha carbon trace of perfringolysin O into a cryo-EM map

Tilley, S.J., Orlova, E.V., Gilbert, R.J.C., Andrew, P.W., Saibil, H.R.

(2005) Cell 121: 247

Released	2005-05-04
Method	ELECTRON MICROSCOPY 29 Å
Organisms	Clostridium perfringens
Macromolecule	PERFRINGOLYSIN O (protein)

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2BK2 \| pdb_00002bk2	Download File View File

The prepore structure of pneumolysin, obtained by fitting the alpha carbon trace of perfringolysin O into a cryo-EM map

Tilley, S.J., Orlova, E.V., Gilbert, R.J.C., Andrew, P.W., Saibil, H.R.

(2005) Cell 121: 247

Released	2005-05-04
Method	ELECTRON MICROSCOPY 28 Å
Organisms	Clostridium perfringens
Macromolecule	PERFRINGOLYSIN O (protein)

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2BPD \| pdb_00002bpd	Download File View File

STRUCTURE OF MURINE DECTIN-1

Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

(2007) Protein Sci 16: 1042

Released	2006-08-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	DECTIN-1 (protein)

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2BPE \| pdb_00002bpe	Download File View File

STRUCTURE OF MURINE DECTIN-1

Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

(2007) Protein Sci 16: 1042

Released	2006-08-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	DECTIN-1 (protein)
Unique Ligands	CA, CL, PG4

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2BPH \| pdb_00002bph	Download File View File

STRUCTURE OF MURINE DECTIN-1

Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

(2007) Protein Sci 16: 1042

Released	2006-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	DECTIN-1 (protein)
Unique Ligands	MG

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2CL8 \| pdb_00002cl8	Download File View File

Dectin-1 in complex with beta-glucan

Brown, J., O'Callaghan, C.A., Marshall, A.S.J., Gilbert, R.J.C., Siebold, C., Gordon, S., Brown, G.D., Jones, E.Y.

(2007) Protein Sci 16: 1042

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	DECTIN-1 (protein)
Unique Ligands	CA, CL
Unique branched monosaccharides	BGC

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2CME \| pdb_00002cme	Download File View File

The crystal structure of SARS coronavirus ORF-9b protein

Meier, C., Aricescu, A.R., Assenberg, R., Aplin, R.T., Gilbert, R.J.C., Grimes, J.M., Stuart, D.I.

(2006) Structure 14: 1157

Released	2006-07-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	HYPOTHETICAL PROTEIN 5 (protein)
Unique Ligands	D10

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2WJW \| pdb_00002wjw	Download File View File

Crystal structure of the human ionotropic glutamate receptor GluR2 ATD region at 1.8 A resolution

Clayton, A., Siebold, C., Gilbert, R.J.C., Sutton, G.C., Harlos, K., McIlhinney, R.A.J., Jones, E.Y., Aricescu, A.R.

(2009) J Mol Biology 392: 1125

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	GLUTAMATE RECEPTOR 2 (protein)
Unique Ligands	ACT, CL, NAG, SO4

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2WJX \| pdb_00002wjx	Download File View File

Crystal structure of the human ionotropic glutamate receptor GluR2 ATD region at 4.1 A resolution

Clayton, A., Siebold, C., Gilbert, R.J.C., Sutton, G.C., Harlos, K., McIlhinney, R.A.J., Jones, E.Y., Aricescu, A.R.

(2009) J Mol Biology 392: 1125

Released	2009-08-18
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Homo sapiens
Macromolecule	GLUTAMATE RECEPTOR 2 (protein)

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2X44 \| pdb_00002x44	Download File View File

Structure of a strand-swapped dimeric form of CTLA-4

Sonnen, A.F.-P., Yu, C., Evans, E.J., Stuart, D.I., Davis, S.J., Gilbert, R.J.C.

(2010) J Mol Biology 399: 207

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 (protein)

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3OSK \| pdb_00003osk	Download File View File

Crystal structure of human CTLA-4 apo homodimer

Yu, C., Sonnen, A.F.-P., Ikemizu, S., Stuart, D.I., Gilbert, R.J.C., Davis, S.J.

(2011) J Biological Chem 286: 6685-6696

Released	2010-12-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cytotoxic T-lymphocyte protein 4 (protein)
Unique Ligands	GOL, NAG

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3ZX7 \| pdb_00003zx7	Download File View File

Complex of lysenin with phosphocholine

De Colibus, L., Sonnen, A.F.P., Morris, K.J., Siebert, C.A., Abrusci, P., Plitzko, J., Hodnik, V., Leippe, M., Volpi, E., Anderluh, G., Gilbert, R.J.C.

(2012) Structure 20: 1498

Released	2012-09-19
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Eisenia fetida
Macromolecule	LYSENIN (protein)
Unique Ligands	NA, PC, PO4

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3ZXD \| pdb_00003zxd	Download File View File

wild-type lysenin

De Colibus, L., Sonnen, A.F.P., Morris, K.J., Siebert, C.A., Abrusci, P., Plitzko, J., Hodnik, V., Leippe, M., Volpi, E., Anderluh, G., Gilbert, R.J.C.

(2012) Structure 20: 1498

Released	2012-09-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Eisenia fetida
Macromolecule	LYSENIN (protein)
Unique Ligands	CL, GOL, MES, MG, NA, SO4

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3ZXG \| pdb_00003zxg	Download File View File

lysenin sphingomyelin complex

De Colibus, L., Sonnen, A.F.P., Morris, K.J., Siebert, C.A., Abrusci, P., Plitzko, J., Hodnik, V., Leippe, M., Volpi, E., Anderluh, G., Gilbert, R.J.C.

(2012) Structure 20: 1498

Released	2012-09-19
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Eisenia fetida
Macromolecule	LYSENIN (protein)
Unique Ligands	0SM, SO4

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4BBK \| pdb_00004bbk	Download File View File

Structural and functional characterisation of the kindlin-1 pleckstrin homology domain

Yates, L.A., Lumb, C.N., Brahme, N.N., Zalyte, R., Bird, L.E., De Colibus, L., Owens, R.J., Calderwood, D.A., Sansom, M.S.P., Gilbert, R.J.C.

(2012) J Biological Chem 287: 43246

Released	2012-11-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	FERMITIN FAMILY HOMOLOG 1 (protein)
Unique Ligands	GOL

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4BQ6 \| pdb_00004bq6	Download File View File

Crystal structure of the RGMB-NEO1 complex form 1

Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	NEOGENIN (protein) RGM DOMAIN FAMILY MEMBER B (protein)
Unique Ligands	NAG

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4BQ7 \| pdb_00004bq7	Download File View File

Crystal structure of the RGMB-Neo1 complex form 2

Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 6.601 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	NEOGENIN (protein) RGM DOMAIN FAMILY MEMBER B (protein)

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4BQ8 \| pdb_00004bq8	Download File View File

Crystal structure of the RGMB-NEO1 complex form 3

Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	NEOGENIN (protein) RGM DOMAIN FAMILY MEMBER B (protein)
Unique Ligands	NAG

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4BQ9 \| pdb_00004bq9	Download File View File

Crystal structure of the FN5 and FN6 domains of NEO1, form 1

Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Mus musculus
Macromolecule	NEOGENIN (protein)
Unique Ligands	NAG

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4BQB \| pdb_00004bqb	Download File View File

Crystal structure of the FN5 and FN6 domains of NEO1, form 2

Bell, C.H., Healey, E., van Erp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	NEOGENIN (protein)
Unique Ligands	NAG

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4BQC \| pdb_00004bqc	Download File View File

Crystal structure of the FN5 and FN6 domains of NEO1 bound to SOS

Bell, C.H., Healey, E., vanErp, S., Bishop, B., Tang, C., Gilbert, R.J.C., Aricescu, A.R., Pasterkamp, R.J., Siebold, C.

(2013) Science 341: 77

Released	2013-06-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	NEOGENIN (protein)
Unique Ligands	NA, NAG
Unique branched monosaccharides	GU4, YYJ

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4C4M \| pdb_00004c4m	Download File View File

Crystal structure of the Sonic Hedgehog-chondroitin-4-sulphate complex

Whalen, D.M., Malinauskas, T., Gilbert, R.J.C., Siebold, C.

(2013) Proc Natl Acad Sci U S A 110: 16420

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Mus musculus
Macromolecule	SONIC HEDGEHOG PROTEIN (protein)
Unique Ligands	ACT, CA, ZN
Unique branched monosaccharides	ASG, BDP

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4C4N \| pdb_00004c4n	Download File View File

Crystal structure of the Sonic Hedgehog-heparin complex

Whalen, D.M., Malinauskas, T., Gilbert, R.J.C., Siebold, C.

(2013) Proc Natl Acad Sci U S A 110: 16420

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Mus musculus
Macromolecule	SONIC HEDGEHOG PROTEIN (protein)
Unique Ligands	CA, CL, ZN
Unique branched monosaccharides	IDS, SGN

1 to 25 of 91 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OEB | pdb_00001oeb

1YJD | pdb_00001yjd

2BK1 | pdb_00002bk1

2BK2 | pdb_00002bk2

2BPD | pdb_00002bpd

2BPE | pdb_00002bpe

2BPH | pdb_00002bph

2CL8 | pdb_00002cl8

2CME | pdb_00002cme

2WJW | pdb_00002wjw

2WJX | pdb_00002wjx

2X44 | pdb_00002x44

3OSK | pdb_00003osk

3ZX7 | pdb_00003zx7

3ZXD | pdb_00003zxd

3ZXG | pdb_00003zxg

4BBK | pdb_00004bbk

4BQ6 | pdb_00004bq6

4BQ7 | pdb_00004bq7

4BQ8 | pdb_00004bq8

4BQ9 | pdb_00004bq9

4BQB | pdb_00004bqb

4BQC | pdb_00004bqc

4C4M | pdb_00004c4m

4C4N | pdb_00004c4n