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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gu, M."

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Search Summary

This query matches 98 Structures.

Refinements

Structure Determination Methodology

experimental (98)

Scientific Name of Source Organism

	Homo sapiens (39)
	Rattus norvegicus (7)
	synthetic construct (7)
	Gracilariopsis lemaneiformis (5)
	Aspergillus niger (4)
	Camellia sinensis (4)
	Mus musculus (4)
	Saccharomyces cerevisiae S288C (4)
	African swine fever virus (3)
	Phanerodontia chrysosporium (3)

More...

Taxonomy

	Eukaryota (69)
	Bacteria (26)
	other sequences (7)
	Varidnaviria (3)

Experimental Method

	X-RAY DIFFRACTION (80)
	ELECTRON MICROSCOPY (14)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (98)
	DNA (1)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (20)
	2.0 - 2.5 (27)
	2.5 - 3.0 (18)
	3.0 - 3.5 (8)
	3.5 - 4.0 (6)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (14)
	2010 - 2014 (27)
	2015 - 2019 (16)
	2020 - 2024 (37)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (16)
	Hydrolases (10)
	Ligases (9)
	Lyases (8)
	Oxidoreductases (6)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)
	mpstruc (3)

Symmetry Type

	Asymmetric (64)
	Cyclic (30)
	Dihedral (6)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (13)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (8)
	Artifacts (4)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 98 Structures

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1H4A \| pdb_00001h4a	Download File View File

Human GammaD Crystallin R58H mutant structure AT 1.15 A resolution

Basak, A.K., Slingsby, C.

(2003) J Mol Biology 328: 1137

Released	2003-05-08
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Gamma-crystallin D (protein)

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1HK0 \| pdb_00001hk0	Download File View File

Human GammaD Crystallin Structure at 1.25 A Resolution

Basak, A.K., Slingsby, C.

(2003) J Mol Biology 328: 1137-1147

Released	2003-05-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Gamma-crystallin D (protein)

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2CCA \| pdb_00002cca	Download File View File

Crystal structure of the catalase-peroxidase (KatG) and S315T mutant from Mycobacterium tuberculosis

Yu, H., Sacchettini, J.C.

(2006) Biochemistry 45: 4131

Released	2006-01-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PEROXIDASE/CATALASE T (protein)
Unique Ligands	HEM

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2CCD \| pdb_00002ccd	Download File View File

Crystal structure of the catalase-peroxidase (KatG) and S315T mutant from Mycobacterium tuberculosis

Yu, H., Sacchettini, J.C.

(2006) Biochemistry 45: 4131

Released	2006-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	PEROXIDASE/CATALASE T (protein)
Unique Ligands	HEM

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2GLX \| pdb_00002glx	Download File View File

Crystal Structure Analysis of bacterial 1,5-AF Reductase

Dambe, T.R., Scheidig, A.J.

(2006) Biochemistry 45: 10030-10042

Released	2006-08-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Ensifer adhaerens
Macromolecule	1,5-anhydro-D-fructose reductase (protein)
Unique Ligands	ACT, NDP

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2M68 \| pdb_00002m68	Download File View File

NMR solution structure ensemble of 3-4D mutant domain 11 IGF2R in complex with IGF2 (domain 11 structure only)

Strickland, M., Williams, C., Richards, E., Minnall, L., Crump, M.P., Frago, S., Hughes, J., Garner, L., Hoppe, H., Rezgui, D., Zaccheo, O.J., Prince, S.N., Hassan, A.B., Whittaker, S.

(2016) Proc Natl Acad Sci U S A 113: E2766-E2775

Released	2014-10-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin-like growth factor 2 receptor variant (protein)

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2M6T \| pdb_00002m6t	Download File View File

NMR solution structure ensemble of 3-4D mutant domain 11 IGF2R

Strickland, M., Williams, C., Richards, E., Minnall, L., Crump, M.P., Frago, S., Hughes, J., Garner, L., Hoppe, H., Rezgui, D., Zaccheo, O.J., Prince, S.N., Hassan, A.B., Whittaker, S.

(2016) Proc Natl Acad Sci U S A 113: E2766-E2775

Released	2014-10-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin-like growth factor 2 receptor variant (protein)

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2Q0I \| pdb_00002q0i	Download File View File

Structure of Pseudomonas Quinolone Signal Response Protein PqsE

Yu, S., Jensen, V., Feldmann, I., Haussler, S., Blankenfeldt, W.

(2009) Biochemistry 48: 10298-10307

Released	2008-06-03
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Quinolone signal response protein (protein)
Unique Ligands	BEZ, FE

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2Q0J \| pdb_00002q0j	Download File View File

Structure of Pseudomonas Quinolone Signal Response Protein PqsE

Yu, S., Jensen, V., Feldmann, I., Haussler, S., Blankenfeldt, W.

(2009) Biochemistry 48: 10298-10307

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Quinolone signal response protein (protein)
Unique Ligands	BEZ, FE

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2X2H \| pdb_00002x2h	Download File View File

Crystal structure of the Gracilariopsis lemaneiformis alpha-1,4- glucan lyase

Rozeboom, H.J., Yu, S., Madrid, S., Kalk, K.H., Dijkstra, B.W.

(2013) J Biological Chem 288: 26764

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Gracilariopsis lemaneiformis
Macromolecule	ALPHA-1,4-GLUCAN LYASE ISOZYME 1 (protein)
Unique Ligands	ACT, CL, GOL

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2X2I \| pdb_00002x2i	Download File View File

Crystal structure of the Gracilariopsis lemaneiformis alpha-1,4- glucan lyase with acarbose

Rozeboom, H.J., Yu, S., Madrid, S., Kalk, K.H., Dijkstra, B.W.

(2013) J Biological Chem 288: 26764

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gracilariopsis lemaneiformis
Macromolecule	ALPHA-1,4-GLUCAN LYASE ISOZYME 1 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	AC1, BGC, GLC

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2X2J \| pdb_00002x2j	Download File View File

Crystal structure of the Gracilariopsis lemaneiformis alpha- 1,4-glucan lyase with deoxynojirimycin

Rozeboom, H.J., Yu, S., Madrid, S., Kalk, K.H., Dijkstra, B.W.

(2013) J Biological Chem 288: 26764

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Gracilariopsis lemaneiformis
Macromolecule	ALPHA-1,4-GLUCAN LYASE ISOZYME 1 (protein)
Unique Ligands	CL, GOL, NOJ

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3DH8 \| pdb_00003dh8	Download File View File

Structure of Pseudomonas Quinolone Signal Response Protein PqsE

Yu, S., Blankenfeldt, W.

(2009) Biochemistry 48: 10298-10307

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Uncharacterized protein PA1000 (protein)
Unique Ligands	B4N, FE

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3DSS \| pdb_00003dss	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, ZN

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3DST \| pdb_00003dst	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with geranylgeranyl pyrophosphate

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, GRG, ZN

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3DSU \| pdb_00003dsu	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with farnesyl pyrophosphate

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, FPP, ZN

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3DSV \| pdb_00003dsv	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with mono-prenylated peptide Ser-Cys-Ser-Cys(GG) derivated from Rab7

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, GER, ZN

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3DSW \| pdb_00003dsw	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with mono-prenylated peptide Ser-Cys(GG)-Ser-Cys derivated from Rab7

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, GER, ZN

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3DSX \| pdb_00003dsx	Download File View File

Crystal structure of RabGGTase(DELTA LRR; DELTA IG)in complex with di-prenylated peptide Ser-Cys(GG)-Ser-Cys(GG) derivated from Rab7

Guo, Z., Yu, S., Goody, R.S., Alexandrov, K., Blankenfeldt, W.

(2008) EMBO J 27: 2444-2456

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Geranylgeranyl transferase type-2 subunit alpha (protein) Geranylgeranyl transferase type-2 subunit beta (protein)
Unique Ligands	CA, GER, ZN

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3FWE \| pdb_00003fwe	Download File View File

Crystal Structure of the Apo D138L CAP mutant

Sharma, H., Wang, J., Kong, J., Yu, S., Steitz, T.

(2009) Proc Natl Acad Sci U S A 106: 16604-16609

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Catabolite gene activator (protein)
Unique Ligands	PRO

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3HIF \| pdb_00003hif	Download File View File

The crystal structure of apo wild type CAP at 3.6 A resolution.

Steitz, T.A., Sharma, H., Wang, J., Kong, J., Yu, S.

(2009) Proc Natl Acad Sci U S A 106: 16604-16609

Released	2009-09-08
Method	X-RAY DIFFRACTION 3.59 Å
Organisms	Escherichia coli
Macromolecule	Catabolite gene activator (protein)

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3K2D \| pdb_00003k2d	Download File View File

Crystal structure of Immunogenic lipoprotein A from Vibrio vulnificus

Yu, S., Rhee, S.

(2011) Proteins 79: 1020-1025

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Vibrio vulnificus
Macromolecule	ABC-type metal ion transport system, periplasmic component (protein)
Unique Ligands	MET