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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Harper, J.W."

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Search Summary

This query matches 70 Structures.

Refinements

Structure Determination Methodology

experimental (70)

Scientific Name of Source Organism

	Homo sapiens (63)
	Saccharomyces cerevisiae S288C (7)
	Drosophila melanogaster (3)
	Gallus gallus (3)
	Saccharomyces cerevisiae (3)
	Tequatrovirus T4 (3)
	Homo sapiens environmental sample (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (70)
	Eukaryota (eukaryotes) (5)
	Duplodnaviria (3)

Experimental Method

	X-RAY DIFFRACTION (51)
	ELECTRON MICROSCOPY (19)

Polymer Entity Type

	Protein (70)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (12)
	2.0 - 2.5 (13)
	2.5 - 3.0 (22)
	3.0 - 3.5 (14)
	3.5 - 4.0 (4)
	> 4.5 (2)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (14)
	2010 - 2014 (9)
	2015 - 2019 (13)
	2020 - 2024 (24)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (21)
	Translocases (5)
	Ligases (8)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (5)
	OPM (5)
	PDBTM (5)
	mpstruc (4)

Symmetry Type

	Asymmetric (64)
	Cyclic (7)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (18)
	All alpha proteins (11)
	Alpha and beta proteins (a/b) (4)
	All beta proteins (11)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (3)
	Small proteins (3)

AllSelected

1 to 25 of 70 Structures

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1FPZ \| pdb_00001fpz	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF KINASE ASSOCIATED PHOSPHATASE (KAP) WITH A SUBSTITUTION OF THE CATALYTIC SITE CYSTEINE (CYS140) TO A SERINE

Song, H., Hanlon, N., Brown, N.R., Noble, M.E.M., Johnson, L.N., Barford, D.

(2001) Mol Cell 7: 615-626

Released	2001-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE INHIBITOR 3 (protein)
Unique Ligands	SO4

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1FQ1 \| pdb_00001fq1	Download File View File

CRYSTAL STRUCTURE OF KINASE ASSOCIATED PHOSPHATASE (KAP) IN COMPLEX WITH PHOSPHO-CDK2

Song, H., Hanlon, N., Brown, N.R., Noble, M.E.M., Johnson, L.N., Barford, D.

(2001) Mol Cell 7: 615-626

Released	2001-05-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN-DEPENDENT KINASE INHIBITOR 3 (protein)
Unique Ligands	ATP, MG

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1FQV \| pdb_00001fqv	Download File View File

Insights into scf ubiquitin ligases from the structure of the skp1-skp2 complex

Schulman, B.A., Carrano, A.C., Jeffrey, P.D., Bowen, Z., Kinnucan, E.R., Finnin, M.S., Elledge, S.J., Harper, J.W., Pagano, M., Pavletich, N.P.

(2000) Nature 408: 381-386

Released	2000-11-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	SKP1 (protein) SKP2 (protein)

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1FS1 \| pdb_00001fs1	Download File View File

INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX

Schulman, B.A., Carrano, A.C., Jeffrey, P.D., Bowen, Z., Kinnucan, E.R.E., Finnin, M.S., Elledge, S.J., Harper, J.W., Pagano, M., Pavletich, N.P.

(2000) Nature 408: 381-386

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN A/CDK2-ASSOCIATED P19 (protein) CYCLIN A/CDK2-ASSOCIATED P45 (protein)

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1FS2 \| pdb_00001fs2	Download File View File

INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX

Schulman, B.A., Carrano, A.C., Jeffrey, P.D., Bowen, Z., Kinnucan, E.R.E., Finnin, M.S., Elledge, S.J., Harper, J.W., Pagano, M., Pavletich, N.P.

(2000) Nature 408: 381-386

Released	2000-11-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SKP1 (protein) SKP2 (protein)

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1LDD \| pdb_00001ldd	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Anaphase Promoting Complex (protein)

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1LDJ \| pdb_00001ldj	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Cullin homolog 1 (protein) ring-box protein 1 (protein)
Unique Ligands	ZN

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1LDK \| pdb_00001ldk	Download File View File

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

(2002) Nature 416: 703-709

Released	2002-05-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	CULLIN HOMOLOG (protein) CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 (protein) SKP2-like protein type gamma (protein) ring-box protein 1 (protein)
Unique Ligands	ZN

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1P22 \| pdb_00001p22	Download File View File

Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity on the SCFbeta-TrCP1 ubiquitin ligase

Wu, G., Xu, G., Schulman, B.A., Jeffrey, P.D., Harper, J.W., Pavletich, N.P.

(2003) Mol Cell 11: 1445-1456

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Beta-catenin (protein) F-box/WD-repeat protein 1A (protein) Skp1 (protein)

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1UN5 \| pdb_00001un5	Download File View File

ARH-II, AN ANGIOGENIN/RNASE A CHIMERA

Holloway, D.E., Baker, M.D., Acharya, K.R.

(2004) Biochemistry 43: 1230

Released	2004-02-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	CIT

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2OVP \| pdb_00002ovp	Download File View File

Structure of the Skp1-Fbw7 complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein)

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2OVQ \| pdb_00002ovq	Download File View File

Structure of the Skp1-Fbw7-CyclinEdegC complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein) cyclinE C-terminal degron (protein)
Unique Ligands	SO4

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2OVR \| pdb_00002ovr	Download File View File

Structure of the Skp1-Fbw7-CyclinEdegN complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein) cyclinE N-terminal degron (protein)
Unique Ligands	SO4

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3HQH \| pdb_00003hqh	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-MacroH2ASBCpep1

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	MacroH2A (protein) Speckle-type POZ protein (protein)
Unique Ligands	ZN

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3HQI \| pdb_00003hqi	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx/BTB/3-box-PucSBC1

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	PucSBC1 (protein) Speckle-type POZ protein (protein)

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3HQL \| pdb_00003hql	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases:SPOPMATHx-PucSBC1_pep2

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	Puckered (protein) Speckle-type POZ protein (protein)
Unique Ligands	SO4

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3HQM \| pdb_00003hqm	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-CiSBC2

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	Protein cubitus interruptus (protein) Speckle-type POZ protein (protein)
Unique Ligands	SO4

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3HSV \| pdb_00003hsv	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-MacroH2ASBCpep2

Zhuang, M., Schulman, B.A., Miller, D.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	Core histone macro-H2A.1 (protein) Speckle-type POZ protein (protein)
Unique Ligands	SO4, ZN

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3HTM \| pdb_00003htm	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPBTB/3-box

Zhuang, M., Walden, H., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Speckle-type POZ protein (protein)

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3HU6 \| pdb_00003hu6	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx/BTB/3-box-PucSBC1

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	Puckered (protein) Speckle-type POZ protein (protein)

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3HVE \| pdb_00003hve	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: GigaxoninBTB/3-box

Zhuang, M., Schulman, B.A.

(2009) Mol Cell 36: 39-50

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Gigaxonin (protein)

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3IVB \| pdb_00003ivb	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1

Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.

To be published

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Core histone macro-H2A.1 (protein) Speckle-type POZ protein (protein)
Unique Ligands	CL, ZN

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3IVQ \| pdb_00003ivq	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-CiSBC2

Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CiSBC2 (protein) Speckle-type POZ protein (protein)

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3IVV \| pdb_00003ivv	Download File View File

Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-PucSBC1_pep1

Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.

(2009) Mol Cell 36: 39-50

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	PucSBC1 (protein) Speckle-type POZ protein (protein)

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3TDI \| pdb_00003tdi	Download File View File

yeast Cul1WHB-Dcn1P acetylated Ubc12N complex

Scott, D.C., Monda, J.K., Bennett, E.J., Harper, J.W., Schulman, B.A.

(2011) Science 334: 674-678

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Defective in cullin neddylation protein 1 (protein) NEDD8-conjugating enzyme UBC12 (protein)

1 to 25 of 70 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FPZ | pdb_00001fpz

1FQ1 | pdb_00001fq1

1FQV | pdb_00001fqv

1FS1 | pdb_00001fs1

1FS2 | pdb_00001fs2

1LDD | pdb_00001ldd

1LDJ | pdb_00001ldj

1LDK | pdb_00001ldk

1P22 | pdb_00001p22

1UN5 | pdb_00001un5

2OVP | pdb_00002ovp

2OVQ | pdb_00002ovq

2OVR | pdb_00002ovr

3HQH | pdb_00003hqh

3HQI | pdb_00003hqi

3HQL | pdb_00003hql

3HQM | pdb_00003hqm

3HSV | pdb_00003hsv

3HTM | pdb_00003htm

3HU6 | pdb_00003hu6

3HVE | pdb_00003hve

3IVB | pdb_00003ivb

3IVQ | pdb_00003ivq

3IVV | pdb_00003ivv

3TDI | pdb_00003tdi