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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hirsch, A.K.H."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Pseudomonas aeruginosa PAO1 (7)
	Escherichia coli (5)
	Cryphonectria parasitica (4)
	Lactococcus cremoris subsp. cremoris NZ9000 (4)
	Mycobacterium tuberculosis H37Rv (4)
	Pseudomonas aeruginosa LESB58 (4)
	Homo sapiens (3)
	Pseudomonas aeruginosa (3)
	Hathewaya histolytica (2)
	Helicobacter pylori 26695 (2)

More...

Taxonomy

	Bacteria (37)
	Eukaryota (8)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (45)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (15)
	2.0 - 2.5 (15)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (39)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (20)
	Hydrolases (14)
	Lyases (2)

Symmetry Type

	Asymmetric (27)
	Cyclic (19)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 46 Structures

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4MES \| pdb_00004mes	Download File View File

Crystal structure of ThiT complexed with LMG116

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	1PE, 26G, BNG, P6G, PEG, PG0, PG4

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4MHW \| pdb_00004mhw	Download File View File

Crystal structure of ThiT with small molecule BAT-25

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	0YN, 1PE, BNG, P6G, PE4, PEG, PG0, PG4

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4MUU \| pdb_00004muu	Download File View File

Structure of ThiT with pyrithiamine bound

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	Thiamine transporter ThiT (protein)
Unique Ligands	1PE, 218, BNG, P6G, PE5, PEG, PG0, PG4, PGE

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4N4D \| pdb_00004n4d	Download File View File

Structure of ThiT with AV-38 bound

Swier, L.J.Y.M., Guskov, A., Slotboom, D.J.

To be published

Released	2014-09-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lactococcus cremoris subsp. cremoris NZ9000
Macromolecule	thiamine binding protein ThiT (protein)
Unique Ligands	1PE, BNG, CL, P33, PEG, PG0, PG4, PGE, XX8

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5LYQ \| pdb_00005lyq	Download File View File

Crystal structure of the Retinoic Acid Receptor alpha in complex with a synthetic spiroketal agonist and a fragment of the TIF2 co-activator.

Andrei, S.A., Ottmann, C.

(2017) Angew Chem Int Ed Engl 56: 5480-5484

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	7BE

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5OJE \| pdb_00005oje	Download File View File

Endothiapepsin with Ligand VSK-B24

Gierse, R.M., Magari, F., Groves, M.R., Heine, A., Klebe, G., Hirsch, A.

(2018) ChemMedChem 13: 2266-2270

Released	2018-09-12
Method	X-RAY DIFFRACTION 1.579 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, GOL, PGE, SO4, VSK

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6RON \| pdb_00006ron	Download File View File

Endothiapepsin in complex with compound 046

Magari, F., Heine, A., Klebe, G.

To be published

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, GOL, KCE

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6RSV \| pdb_00006rsv	Download File View File

Endothiapepsin in complex with 017

Magari, F., Heine, A., Klebe, G.

To be published

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	DMS, GOL, KHW, KHZ

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6SCV \| pdb_00006scv	Download File View File

Endothiapepsin in complex with ligand 69

Magari, F., Heine, A., Klebe, G.

To be published

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	GOL, L7K

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6VJS \| pdb_00006vjs	Download File View File

Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex

Murakami, K.S., Molodtsov, V.

(2020) ACS Infect Dis 6: 2573-2581

Released	2020-10-07
Method	X-RAY DIFFRACTION 4.02 Å
Organisms	Escherichia coli
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) DNA-directed RNA polymerase subunit beta (protein) DNA-directed RNA polymerase subunit beta' (protein) DNA-directed RNA polymerase subunit omega (protein) RNA polymerase sigma factor RpoD (protein)
Unique Ligands	MG, QZY, ZN

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6XXG \| pdb_00006xxg	Download File View File

Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans

Gierse, R.M., Reddem, E., Grooves, M.R.

(2021) Biochem Biophys Res Commun 539: 42-47

Released	2021-01-20
Method	X-RAY DIFFRACTION 2.099 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase (protein)
Unique Ligands	CA, MG, TPP

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6YIZ \| pdb_00006yiz	Download File View File

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with triazolo-pyridine inverse agonist A

Schmelz, S., Blankenfeldt, W.

(2021) Adv Sci (Weinh) 8: e2004369-e2004369

Released	2021-04-14
Method	X-RAY DIFFRACTION 2.163 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Transcriptional regulator MvfR (protein)
Unique Ligands	MG, OT2, OT8

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6Z8L \| pdb_00006z8l	Download File View File

Alpha-Amylase in complex with probe fragments

Adam, S., Koehnke, J.

(2020) Chem Sci 12: 1286-1294

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.40000369636 Å
Organisms	Homo sapiens
Macromolecule	Pancreatic alpha-amylase (protein)
Unique Ligands	CA, CL, GLC
Unique branched monosaccharides	GLC

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7A9G \| pdb_00007a9g	Download File View File

Truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Mycobacterium tuberculosis with intermediate 2-acetyl-thiamine diphosphate

Gierse, R.M., Reddem, E., Grooves, M.R.

(2022) Sci Rep 12: 7221-7221

Released	2022-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase (protein)
Unique Ligands	GOL, HTL, MG, PEG, PG4, PGE, PO4

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7A9H \| pdb_00007a9h	Download File View File

Truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Mycobacterium tuberculosis

Gierse, R.M., Reddem, E., Grooves, M.R.

(2022) Sci Rep 12: 7221-7221

Released	2022-03-23
Method	X-RAY DIFFRACTION 1.849 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase (protein)
Unique Ligands	MG, TPP

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7OC7 \| pdb_00007oc7	Download File View File

LasB, alpha-alkyl-N-aryl mercaptoacetamide

Koehnke, J., Sikandar, A.

(2022) Angew Chem Int Ed Engl 61: e202112295-e202112295

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Neutral metalloproteinase (protein)
Unique Ligands	CA, V85, ZN

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7P4U \| pdb_00007p4u	Download File View File

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE

Schmelz, S., Blankenfeldt, W.

(2023) Adv Sci (Weinh) 10: e2204443-e2204443

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Transcriptional regulator MvfR (protein)
Unique Ligands	5N9

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7QA0 \| pdb_00007qa0	Download File View File

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 1456

Schmelz, S., Blankenfeldt, W.

(2024) SSRN

Released	2022-11-23
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Multiple virulence factor regulator MvfR (protein)
Unique Ligands	9ZL

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7QA3 \| pdb_00007qa3	Download File View File

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound N-((2-(4-phenoxyphenyl)thiazol-5-yl)methyl)-2-(trifluoromethyl)pyridin-4-amine

Schmelz, S., Blankenfeldt, W.

(2024) SSRN

Released	2022-11-23
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Multiple virulence factor regulator MvfR (protein)
Unique Ligands	A0F

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7QAV \| pdb_00007qav	Download File View File

Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound N-((2-(4-cyclopropylphenyl)thiazol-5-yl)methyl)-2-(trifluoromethyl)pyridin-4-amine

Schmelz, S., Blankenfeldt, W.

(2024) SSRN

Released	2022-11-30
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Multiple virulence factor regulator MvfR (protein)
Unique Ligands	XBH

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7SH0 \| pdb_00007sh0	Download File View File

CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) COMPLEX WITH A HIGHLY SELECTIVE AND POTENT SMALL MOLECULE

Li, L., Bouvier, M.

(2022) Angew Chem Int Ed Engl 61: e202203560-e202203560

Released	2022-07-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum aminopeptidase 2 (protein)
Unique Ligands	EPE, GIY, MES, NA, ZN

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7Z5U \| pdb_00007z5u	Download File View File

Crystal structure of the peptidase domain of collagenase G from Clostridium histolyticum in complex with a hydroxamate-based inhibitor

Schoenauer, E., Brandstetter, H.

(2022) J Med Chem 65: 12933-12955

Released	2022-11-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Hathewaya histolytica
Macromolecule	Collagenase ColG (protein)
Unique Ligands	CA, IFW, ZN

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7ZBV \| pdb_00007zbv	Download File View File

Crystal structure of the peptidase domain of collagenase G from Clostridium histolyticum in complex with a diphosphonate-based inhibitor

Schoenauer, E., Brandstetter, H.

(2022) J Med Chem 65: 12933-12955

Released	2022-11-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Hathewaya histolytica
Macromolecule	Collagenase ColG (protein)
Unique Ligands	144, CA, ITO, ZN

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8A29 \| pdb_00008a29	Download File View File

Apo 1-deoxy-D-xylulose 5-phosphate synthase from Pseudomonas aeruginosa

Hamid, R., Adam, S., Lacour, A., Monjas, L., Hirsch, A.

(2023) J Biological Chem 299: 105152-105152

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa LESB58
Macromolecule	1-deoxy-D-xylulose-5-phosphate synthase (protein)
Unique Ligands	CA, CL, GOL, MG, NA

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8A45 \| pdb_00008a45	Download File View File

Structural analysis of 1-deoxy-D-xylulose 5-phosphate synthase from Pseudomonas aeruginosa with 2-acetyl thiamine diphosphate

Hamid, R., Hirsch, A.

(2023) J Biological Chem 299: 105152-105152

Released	2023-07-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa LESB58
Macromolecule	1-deoxy-D-xylulose-5-phosphate synthase (protein)
Unique Ligands	CA, HTL, MG, NA

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4MES | pdb_00004mes

4MHW | pdb_00004mhw

4MUU | pdb_00004muu

4N4D | pdb_00004n4d

5LYQ | pdb_00005lyq

5OJE | pdb_00005oje

6RON | pdb_00006ron

6RSV | pdb_00006rsv

6SCV | pdb_00006scv

6VJS | pdb_00006vjs

6XXG | pdb_00006xxg

6YIZ | pdb_00006yiz

6Z8L | pdb_00006z8l

7A9G | pdb_00007a9g

7A9H | pdb_00007a9h

7OC7 | pdb_00007oc7

7P4U | pdb_00007p4u

7QA0 | pdb_00007qa0

7QA3 | pdb_00007qa3

7QAV | pdb_00007qav

7SH0 | pdb_00007sh0

7Z5U | pdb_00007z5u

7ZBV | pdb_00007zbv

8A29 | pdb_00008a29

8A45 | pdb_00008a45