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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jam, M."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Zobellia galactanivorans (16)
	Alteromonas macleodii (1)
	Christiangramia forsetii KT0803 (1)
	Pseudoalteromonas carrageenovora (1)

Taxonomy

Bacteria (19)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (10)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (2)
	2010 - 2014 (9)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (14)
	Lyases (3)

Symmetry Type

	Asymmetric (15)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (12)
	Artifacts (6)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 19 of 19 Structures

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1O4Y \| pdb_00001o4y	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE A FROM ZOBELLIA GALACTANIVORANS

Allouch, J., Jam, M., Helbert, W., Barbeyron, T., Kloareg, B., Henrissat, B., Czjzek, M.

(2003) J Biological Chem 278: 47171-47180

Released	2003-12-09
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Zobellia galactanivorans
Macromolecule	beta-agarase A (protein)
Unique Ligands	CA, NA, SO4

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1O4Z \| pdb_00001o4z	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE B FROM ZOBELLIA GALACTANIVORANS

Allouch, J., Jam, M., Helbert, W., Barbeyron, T., Kloareg, B., Henrissat, B., Czjzek, M.

(2003) J Biological Chem 278: 47171-47180

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Zobellia galactanivorans
Macromolecule	beta-agarase B (protein)
Unique Ligands	EPE, MG, NA

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3LMW \| pdb_00003lmw	Download File View File

Crystal structure of iota-carrageenase family GH82 from A. fortis in absence of chloride ions

Rebuffet, E., Barbeyron, T., Jeudy, A., Czjzek, M., Michel, G.

(2010) Biochemistry 49: 7590-7599

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alteromonas macleodii
Macromolecule	Iota-carrageenase, CgiA (protein)
Unique Ligands	CA, NI, NO3

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3ZPY \| pdb_00003zpy	Download File View File

Crystal structure of the marine PL7 alginate lyase AlyA1 from Zobellia galactanivorans

Thomas, F., Jeudy, A., Michel, G., Czjzek, M.

(2013) J Biological Chem 288: 23021

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Zobellia galactanivorans
Macromolecule	ALGINATE LYASE, FAMILY PL7 (protein)
Unique Ligands	NA

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4ASM \| pdb_00004asm	Download File View File

Crystal structure of the catalytic domain of beta-agarase D from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Bernard, T., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-AGARASE D (protein)
Unique Ligands	CA, IMD, PEG

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4ATE \| pdb_00004ate	Download File View File

High resolution crystal structure of beta-porphyranase A from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Jam, M., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-PORPHYRANASE A (protein)
Unique Ligands	CA, CL, SO4

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4ATF \| pdb_00004atf	Download File View File

Crystal structure of inactivated mutant beta-agarase B in complex with agaro-octaose

Bernard, T., Hehemann, J.H., Correc, G., Jam, M., Michel, G., Czjzek, M.

(2012) J Biological Chem 287: 30571

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zobellia galactanivorans
Macromolecule	BETA-AGARASE B (protein)
Unique Ligands	NA
Unique branched monosaccharides	AAL, GAL

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4BE3 \| pdb_00004be3	Download File View File

crystal structure of the exolytic PL7 alginate lyase AlyA5 from Zobellia galactanivorans

Thomas, F., Jeudy, A., Michel, G., Czjzek, M.

(2013) J Biological Chem 288: 23021

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Zobellia galactanivorans
Macromolecule	ALGINATE LYASE, FAMILY PL7 (protein)
Unique Ligands	NA, SRT, TAR, TLA

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4BOW \| pdb_00004bow	Download File View File

Crystal structure of LamA_E269S from Z. galactanivorans in complex with laminaritriose and laminaritetraose

Labourel, A., Jeudy, A., Czjzek, M., Michel, G.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	BGC, CA, NA
Unique branched monosaccharides	BGC, GLC

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4BPZ \| pdb_00004bpz	Download File View File

Crystal structure of lamA_E269S from Zobellia galactanivorans in complex with a trisaccharide of 1,3-1,4-beta-D-glucan.

Labourel, A., Jam, M., Jeudy, A., Czjzek, M., Michel, G.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

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4BQ1 \| pdb_00004bq1	Download File View File

Crystal structure of of LamAcat from Zobellia galactanivorans

Labourel, A., Jam, M., Jeudy, A., Michel, G., Czjzek, M.

(2014) J Biological Chem 289: 2027

Released	2013-12-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	CA, GOL

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4CRQ \| pdb_00004crq	Download File View File

Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S

Labourel, A., Jam, M., Legentil, L., Sylla, B., Ficko-Blean, E., Hehemann, J.H., Ferrieres, V., Czjzek, M., Michel, G.

(2015) Acta Crystallogr D Biol Crystallogr 71: 173

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	ACT, CA, CL, EDO, MG, NA

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4CTE \| pdb_00004cte	Download File View File

Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S in complex with a thio-oligosaccharide

Labourel, A., Jam, M., Legentil, L., Sylla, B., Ficko-Blean, E., Hehemann, J.H., Ferrieres, V., Czjzek, M., Michel, G.

(2015) Acta Crystallogr D Biol Crystallogr 71: 173

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	ACT, CA, CL, EDO, GOL, NA
Unique branched monosaccharides	BGC, GS1

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5FUI \| pdb_00005fui	Download File View File

Crystal structure of the C-terminal CBM6 of LamC a marine laminarianse from Zobellia galactanivorans

Labourel, A., Jam, M., Legentil, L., Sylla, B., Hehemann, J.H., Ficko-Blean, E., Ferrieres, V., Czjzek, M., Michel, G.

(2016) FEBS J 283: 1863

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Zobellia galactanivorans
Macromolecule	ENDO-1,3-BETA-GLUCANASE, FAMILY GH16 (protein)
Unique Ligands	APY, GOL, MG

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5OCQ \| pdb_00005ocq	Download File View File

Crystal structure of the complex of the kappa-carrageenase from Pseudoalteromonas carrageenovora with an oligotetrasaccharide of kappa-carrageenan

Czjzek, M., Leroux, C., Bernard, T., Matard-Mann, M., Jeudy, A., Michel, G.

(2017) J Biological Chem 292: 19919-19934

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudoalteromonas carrageenovora
Macromolecule	Kappa-carrageenase (protein)
Unique Ligands	CIT
Unique branched monosaccharides	9RN, G4S

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5OCR \| pdb_00005ocr	Download File View File

Crystal structure of the kappa-carrageenase zobellia_236 from Zobellia galactanivorans

Czjzek, M., Matard-Mann, M., Michel, G., Jeudy, A., Larocque, R.

(2017) J Biological Chem 292: 19919-19934

Released	2017-10-18
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Zobellia galactanivorans
Macromolecule	Kappa-carrageenase (protein)
Unique Ligands	GOL, MG

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5OLC \| pdb_00005olc	Download File View File

Crystal structure of the 3,6-anhydro-D-galactonate cycloisomerase from Zobellia galactanivorans

Michel, G., Czjzek, M., Jam, M.

(2017) Nat Commun 8: 1685-1685

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Zobellia galactanivorans
Macromolecule	Galactonate dehydratase (protein)
Unique Ligands	MG

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5OPQ \| pdb_00005opq	Download File View File

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

Ficko-Blean, E., Michel, G., Czjzek, M.

(2017) Nat Commun 8: 1685-1685

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zobellia galactanivorans
Macromolecule	3,6-anhydro-D-galactosidase (protein)
Unique Ligands	CL, MPD, TRS

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8QX6 \| pdb_00008qx6	Download File View File

Novel laminarin-binding CBM X584

Zuehlke, M.K., Jeudy, A., Czjzek, M.

(2024) Environ Microbiol 26: e16624-e16624

Released	2024-09-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Christiangramia forsetii KT0803
Macromolecule	PKD domain-containing protein (protein)
Unique branched monosaccharides	BGC

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1O4Y | pdb_00001o4y

THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE A FROM ZOBELLIA GALACTANIVORANS

1O4Z | pdb_00001o4z

THE THREE-DIMENSIONAL STRUCTURE OF BETA-AGARASE B FROM ZOBELLIA GALACTANIVORANS

3LMW | pdb_00003lmw

Crystal structure of iota-carrageenase family GH82 from A. fortis in absence of chloride ions

3ZPY | pdb_00003zpy

Crystal structure of the marine PL7 alginate lyase AlyA1 from Zobellia galactanivorans

4ASM | pdb_00004asm

Crystal structure of the catalytic domain of beta-agarase D from Zobellia galactanivorans

4ATE | pdb_00004ate

High resolution crystal structure of beta-porphyranase A from Zobellia galactanivorans

4ATF | pdb_00004atf

Crystal structure of inactivated mutant beta-agarase B in complex with agaro-octaose

4BE3 | pdb_00004be3

crystal structure of the exolytic PL7 alginate lyase AlyA5 from Zobellia galactanivorans

4BOW | pdb_00004bow

Crystal structure of LamA_E269S from Z. galactanivorans in complex with laminaritriose and laminaritetraose

4BPZ | pdb_00004bpz

Crystal structure of lamA_E269S from Zobellia galactanivorans in complex with a trisaccharide of 1,3-1,4-beta-D-glucan.

4BQ1 | pdb_00004bq1

Crystal structure of of LamAcat from Zobellia galactanivorans

4CRQ | pdb_00004crq

Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S

4CTE | pdb_00004cte

Crystal structure of the catalytic domain of the modular laminarinase ZgLamC mutant E142S in complex with a thio-oligosaccharide

5FUI | pdb_00005fui

Crystal structure of the C-terminal CBM6 of LamC a marine laminarianse from Zobellia galactanivorans

5OCQ | pdb_00005ocq

Crystal structure of the complex of the kappa-carrageenase from Pseudoalteromonas carrageenovora with an oligotetrasaccharide of kappa-carrageenan

5OCR | pdb_00005ocr

Crystal structure of the kappa-carrageenase zobellia_236 from Zobellia galactanivorans

5OLC | pdb_00005olc

Crystal structure of the 3,6-anhydro-D-galactonate cycloisomerase from Zobellia galactanivorans

5OPQ | pdb_00005opq

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

8QX6 | pdb_00008qx6

Novel laminarin-binding CBM X584

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1O4Y | pdb_00001o4y

1O4Z | pdb_00001o4z

3LMW | pdb_00003lmw

3ZPY | pdb_00003zpy

4ASM | pdb_00004asm

4ATE | pdb_00004ate

4ATF | pdb_00004atf

4BE3 | pdb_00004be3

4BOW | pdb_00004bow

4BPZ | pdb_00004bpz

4BQ1 | pdb_00004bq1

4CRQ | pdb_00004crq

4CTE | pdb_00004cte

5FUI | pdb_00005fui

5OCQ | pdb_00005ocq

5OCR | pdb_00005ocr

5OLC | pdb_00005olc

5OPQ | pdb_00005opq

8QX6 | pdb_00008qx6