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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Johnson, C.M."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (10)
	Clostridioides difficile R20291 (5)
	synthetic construct (5)

Taxonomy

	Riboviria (10)
	Bacteria (5)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (4)

Symmetry Type

	Cyclic (9)
	Asymmetric (6)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)

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1 to 15 of 15 Structures

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6WTT \| pdb_00006wtt	Download File View File

Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376

Sacco, M., Ma, C., Chen, Y., Wang, J.

(2020) Cell Res 30: 678-692

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	B1S, CL, GOL, K36, MG, PEG

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6XA4 \| pdb_00006xa4	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW241 (protein)
Unique Ligands	GOL

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6XBG \| pdb_00006xbg	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW246

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW246 (protein)
Unique Ligands	GOL, NA

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6XBH \| pdb_00006xbh	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW247 (protein)
Unique Ligands	GOL, NA

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6XBI \| pdb_00006xbi	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW248 (protein)
Unique Ligands	DMS, GOL, NA

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6XFN \| pdb_00006xfn	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW243

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) UAW243 (protein)
Unique Ligands	GOL

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7JRN \| pdb_00007jrn	Download File View File

Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2021) ACS Cent Sci 7: 1245-1260

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	SO4, TTT, ZN

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7KX5 \| pdb_00007kx5	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A

Sacco, M., Wang, J., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2020-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GOL, X7V

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7RCW \| pdb_00007rcw	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	ACT, GOL, PEG, ZN, ZZ7

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7RCX \| pdb_00007rcx	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, SO4, ZN

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7RCY \| pdb_00007rcy	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	RB6, ZN

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7RCZ \| pdb_00007rcz	Download File View File

Crystal structure of C. difficile SpoVD in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Stage V sporulation protein D (Sporulation specific penicillin-binding protein) (protein)
Unique Ligands	EPE, PEG, POL, SO4, ZN, ZZ7

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7RD0 \| pdb_00007rd0	Download File View File

Crystal structure of C. difficile penicillin-binding protein 3 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, ZN

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7RN0 \| pdb_00007rn0	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R

Sacco, M., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2021-08-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	5ZB, GOL

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7RN1 \| pdb_00007rn1	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-62-2R

Sacco, M., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2021-09-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	5ZF, GOL, SO4

1 to 15 of 15 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6WTT | pdb_00006wtt

Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376

6XA4 | pdb_00006xa4

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241

6XBG | pdb_00006xbg

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW246

6XBH | pdb_00006xbh

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247

6XBI | pdb_00006xbi

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248

6XFN | pdb_00006xfn

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW243

7JRN | pdb_00007jrn

Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617

7KX5 | pdb_00007kx5

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A

7RCW | pdb_00007rcw

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin

7RCX | pdb_00007rcx

Crystal structure of C. difficile penicillin-binding protein 2 in apo form

7RCY | pdb_00007rcy

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

7RCZ | pdb_00007rcz

Crystal structure of C. difficile SpoVD in complex with ampicillin

7RD0 | pdb_00007rd0

Crystal structure of C. difficile penicillin-binding protein 3 in apo form

7RN0 | pdb_00007rn0

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R

7RN1 | pdb_00007rn1

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-62-2R

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6WTT | pdb_00006wtt

6XA4 | pdb_00006xa4

6XBG | pdb_00006xbg

6XBH | pdb_00006xbh

6XBI | pdb_00006xbi

6XFN | pdb_00006xfn

7JRN | pdb_00007jrn

7KX5 | pdb_00007kx5

7RCW | pdb_00007rcw

7RCX | pdb_00007rcx

7RCY | pdb_00007rcy

7RCZ | pdb_00007rcz

7RD0 | pdb_00007rd0

7RN0 | pdb_00007rn0

7RN1 | pdb_00007rn1