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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, J.E."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

Homo sapiens (24)

Taxonomy

Eukaryota (24)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (12)
	1.5 - 2.0 (8)
	2.0 - 2.5 (2)

Release Date

2010 - 2014 (24)

Enzyme Classification Name

Isomerases (24)

Symmetry Type

Asymmetric (24)

SCOP Classification

All beta proteins (24)

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1 to 24 of 24 Structures

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Explore in 3D

3QYU \| pdb_00003qyu	Download File View File

Crystal structure of human cyclophilin D at 1.54 A resolution at room temperature

Colliandre, L., Gelin, M., Labesse, G., Guichou, J.-F.

(2011) Acta Crystallogr D Biol Crystallogr 67: 747-755

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F (protein)

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3R49 \| pdb_00003r49	Download File View File

Human cyclophilin D complexed with quinolin-8-amine

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	Q8A

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3R4G \| pdb_00003r4g	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	4SO, GOL

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3R54 \| pdb_00003r54	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	FP6

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3R56 \| pdb_00003r56	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	6AI, P33

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3R57 \| pdb_00003r57	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	GOL, N3M, NA

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3R59 \| pdb_00003r59	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	3AO

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3RCF \| pdb_00003rcf	Download File View File

Human cyclophilin D complexed with N-[(4-aminophenyl)sulfonyl]benzamide

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	BS4

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3RCG \| pdb_00003rcg	Download File View File

Human cyclophilin D complexed with dimethylformamide

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 0.97 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	CL, DMF

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3RCI \| pdb_00003rci	Download File View File

Human cyclophilin D complexed with 5-methyl-1,2-oxazol-3-amine

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	M3I

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3RCK \| pdb_00003rck	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	1FP

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3RCL \| pdb_00003rcl	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	5AO, P4C

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3RD9 \| pdb_00003rd9	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	MSY, PEG

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3RDA \| pdb_00003rda	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	MIO

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3RDB \| pdb_00003rdb	Download File View File

Human Cyclophilin D Complexed with a Fragment

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	5MZ, P4C

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3RDC \| pdb_00003rdc	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1777-1787

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	EA4

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3RDD \| pdb_00003rdd	Download File View File

Human Cyclophilin A Complexed with an Inhibitor

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	EA4

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4J58 \| pdb_00004j58	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Colliandre, L., Gelin, M., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	53Z, PO4

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4J59 \| pdb_00004j59	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	671

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4J5A \| pdb_00004j5a	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

To be published

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	67Z, DMS

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4J5B \| pdb_00004j5b	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	6B4

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4J5C \| pdb_00004j5c	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	7I6

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4J5D \| pdb_00004j5d	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	728

Explore in 3D

4J5E \| pdb_00004j5e	Download File View File

Human Cyclophilin D Complexed with an Inhibitor

Gelin, M., Colliandre, L., Bessin, Y., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2014-02-19
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein)
Unique Ligands	7B7

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3QYU | pdb_00003qyu

3R49 | pdb_00003r49

3R4G | pdb_00003r4g

3R54 | pdb_00003r54

3R56 | pdb_00003r56

3R57 | pdb_00003r57

3R59 | pdb_00003r59

3RCF | pdb_00003rcf

3RCG | pdb_00003rcg

3RCI | pdb_00003rci

3RCK | pdb_00003rck

3RCL | pdb_00003rcl

3RD9 | pdb_00003rd9

3RDA | pdb_00003rda

3RDB | pdb_00003rdb

3RDC | pdb_00003rdc

3RDD | pdb_00003rdd

4J58 | pdb_00004j58

4J59 | pdb_00004j59

4J5A | pdb_00004j5a

4J5B | pdb_00004j5b

4J5C | pdb_00004j5c

4J5D | pdb_00004j5d

4J5E | pdb_00004j5e