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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kortemme, T."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (12)
	Mus musculus (4)
	synthetic construct (4)
	Escherichia coli (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Choanoflagellata (2)
	Comamonas testosteroni (2)
	Chlamydomonas reinhardtii (1)
	Desulfurococcus mucosus (1)
	Gallus gallus (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (5)
	other sequences (4)
	Riboviria (3)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (22)
	SOLUTION NMR (4)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (29)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (9)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (4)
	2005 - 2009 (7)
	2010 - 2014 (3)
	2015 - 2019 (6)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (12)
	Isomerases (2)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (2)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (3)
	Artifacts (2)

AllSelected

1 to 25 of 29 Structures

Page 1 of 2

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1MOW \| pdb_00001mow	Download File View File

E-DreI

Chevalier, B.S., Kortemme, T., Chadsey, M.S., Baker, D., Monnat Jr., R.J., Stoddard, B.L.

(2002) Mol Cell 10: 895-905

Released	2002-11-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Chlamydomonas reinhardtii Desulfurococcus mucosus
Macromolecule	chimera of homing endonuclease I-DmoI and DNA endonuclease I-CreI (protein) 5'-D(CPCPAPAPAPCPTPGPTPCPTPCPAPAPGPTPTPCPCPGPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPCPGPGPAPAPCPTPTPGPAPGPAPCPAPGPTPTPTPGPG)-3' (nucleic acid)
Unique Ligands	GOL, MG, SO4

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1MPU \| pdb_00001mpu	Download File View File

Crystal Structure of the free human NKG2D immunoreceptor

McFarland, B.J., Kortemme, T., Baker, D., Strong, R.K.

(2003) Structure 11: 411-422

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	NKG2-D type II integral membrane protein (protein)
Unique Ligands	PO4

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1PVH \| pdb_00001pvh	Download File View File

Crystal structure of leukemia inhibitory factor in complex with gp130

Boulanger, M.J., Bankovich, A.J., Kortemme, T., Baker, D., Garcia, K.C.

(2003) Mol Cell 12: 577-589

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-6 receptor beta chain (protein) Leukemia inhibitory factor (protein)
Unique Ligands	IOD

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1UJZ \| pdb_00001ujz	Download File View File

Crystal structure of the E7_C/Im7_C complex; a computationally designed interface between the colicin E7 DNase and the Im7 Immunity protein

Kortemme, T., Joachimiak, L.A., Bullock, A.N., Schuler, A.D., Stoddard, B.L., Baker, D.

(2004) Nat Struct Mol Biol 11: 371-379

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Designed Colicin E7 DNase (protein) Designed Colicin E7 immunity protein (protein)

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1YVB \| pdb_00001yvb	Download File View File

the Plasmodium falciparum Cysteine Protease Falcipain-2

Wang, S.X.

(2006) Proc Natl Acad Sci U S A 103: 11503-11508

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus Plasmodium falciparum 3D7
Macromolecule	Cystatin (protein) falcipain 2 (protein)
Unique Ligands	GOL

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2ERH \| pdb_00002erh	Download File View File

Crystal Structure of the E7_G/Im7_G complex; a designed interface between the colicin E7 DNAse and the Im7 immunity protein

Joachimiak, L.A., Kortemme, T., Stoddard, B.L., Baker, D.

(2006) J Mol Biology 361: 195-208

Released	2006-07-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Colicin E7 (protein) Colicin E7 immunity protein (protein)

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2II0 \| pdb_00002ii0	Download File View File

Crystal Structure of catalytic domain of Son of sevenless (Rem-Cdc25) in the absence of Ras

Freedman, T.S., Sondermann, H., Friedland, G.D., Kortemme, T., Bar-Sagi, D., Marqusee, S., Kuriyan, J.

(2006) Proc Natl Acad Sci U S A 103: 16692-16697

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Son of sevenless homolog 1 (protein)

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2IJE \| pdb_00002ije	Download File View File

Crystal Structure of the Cdc25 domain of RasGRF1

Freedman, T.S., Kuriyan, J.

(2006) Proc Natl Acad Sci U S A 103: 16692-16697

Released	2006-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Guanine nucleotide-releasing protein (protein)
Unique Ligands	GOL

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2KN5 \| pdb_00002kn5	Download File View File

A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

Friedland, G.D.

(2009) PLoS Comput Biol 5: e1000393-e1000393

Released	2009-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2P1Y \| pdb_00002p1y	Download File View File

1.B2.D9, a bispecific alpha/beta TCR

McBeth, C., Pizarro, J.C., Strong, R.K.

(2008) J Mol Biology 375: 1306-1319

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Mus musculus
Macromolecule	bispecific alpha/beta TCR (protein)

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2P24 \| pdb_00002p24	Download File View File

I-Au/MBP125-135

McBeth, C., Strong, R.K.

(2008) J Mol Biology 375: 1306-1319

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	H-2 class II histocompatibility antigen, A-U alpha chain (protein) H-2 class II histocompatibility antigen, A-U beta chain (protein)

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3QBV \| pdb_00003qbv	Download File View File

Structure of designed orthogonal interaction between CDC42 and nucleotide exchange domains of intersectin

Kapp, G.T., Remenyi, A., Lim, W.A., Kortemme, T.

(2012) Proc Natl Acad Sci U S A 109: 5277-5282

Released	2012-02-08
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cell division control protein 42 homolog (protein) Intersectin-1 (protein)
Unique Ligands	GDP

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3SOA \| pdb_00003soa	Download File View File

Full-length human CaMKII

Chao, L.H., Kuriyan, J.

(2011) Cell 146: 732-745

Released	2011-08-31
Method	X-RAY DIFFRACTION 3.5501 Å
Organisms	Homo sapiens
Macromolecule	Calcium/calmodulin-dependent protein kinase type II subunit alpha with a beta 7 linker (protein)
Unique Ligands	DB8

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4HOP \| pdb_00004hop	Download File View File

Crystal structure of the computationally designed NNOS-Syntrophin complex

Harwood, I.M., Melero, C., Ollikainen, N., Kortemme, T.

(2014) Proc Natl Acad Sci U S A 111: 15426-15431

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Alpha-1-syntrophin (protein) Nitric oxide synthase, brain (protein)

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5WDO \| pdb_00005wdo	Download File View File

H-Ras bound to GMP-PNP at 277K

Cofsky, J.C., Bandaru, P., Gee, C.L., Kuriyan, J.

(2017) Elife 6:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein)
Unique Ligands	CA, GNP, MG, NA

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5WDP \| pdb_00005wdp	Download File View File

H-Ras mutant L120A bound to GMP-PNP at 277K

Cofsky, J.C., Bandaru, P., Gee, C.L., Kuriyan, J.

(2017) Elife 6:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein)
Unique Ligands	CA, GNP, MG

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5WDQ \| pdb_00005wdq	Download File View File

H-Ras mutant L120A bound to GMP-PNP at 100K

Bandaru, P., Gee, C.L., Kuriyan, J.

(2017) Elife 6:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	GTPase HRas (protein)
Unique Ligands	ACT, CA, GNP, MG, NA

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5WDR \| pdb_00005wdr	Download File View File

Choanoflagellate Salpingoeca rosetta Ras with GMP-PNP

Kondo, Y., Gee, C.L., Kuriyan, J.

(2017) Elife 6:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Choanoflagellata
Macromolecule	Ras protein (protein)
Unique Ligands	GNP, MG, NA

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5WDS \| pdb_00005wds	Download File View File

Choanoflagellate Salpingoeca rosetta Ras with GDP bound

Kondo, Y., Gee, C.L., Kuriyan, J.

(2017) Elife 6:

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Choanoflagellata
Macromolecule	Ras protein (protein)
Unique Ligands	GDP, GOL, MG

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6OB5 \| pdb_00006ob5	Download File View File

Computationally-designed, modular sense/response system (S3-2D)

Thompson, M.C., Glasgow, A.A., Huang, Y.M., Fraser, J.S., Kortemme, T.

(2019) Science 366: 1024-1028

Released	2019-12-04
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Escherichia coli unidentified
Macromolecule	Ankyrin Repeat Domain (AR), S3-2D variant (protein) Maltodextrin-binding protein (protein)
Unique Ligands	FPP
Unique branched monosaccharides	GLC

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6UAD \| pdb_00006uad	Download File View File

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

Kundert, K., Thompson, M.C., Liu, L., Fraser, J.S., Kortemme, T.

To be published

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Comamonas testosteroni
Macromolecule	Ketosteroid isomerase with truncated and designed loop (protein)
Unique Ligands	DXC, PO4

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6UAE \| pdb_00006uae	Download File View File

Ketosteroid isomerase (C. testosteroni) with truncated & designed loop for precise positioning of a catalytic E38

Krivacic, C., Kundert, K., Thompson, M.C., Fraser, J.S., Kortemme, T.

To be published

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Comamonas testosteroni
Macromolecule	Ketosteroid isomerase with designed loop (protein)
Unique Ligands	DXC, EQU, SO4