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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kuhlman, B."

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Search Summary

This query matches 87 Structures.

Refinements

Structure Determination Methodology

experimental (87)

Scientific Name of Source Organism

	Homo sapiens (46)
	synthetic construct (33)
	Avena sativa (7)
	Escherichia coli (4)
	Finegoldia magna ATCC 29328 (4)
	Mus musculus (3)
	Staphylococcus aureus (3)
	Acetivibrio thermocellus ATCC 27405 (2)
	Rattus norvegicus (2)
	Saccharomyces cerevisiae S288C (2)

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Taxonomy

	Eukaryota (52)
	other sequences (33)
	Bacteria (15)
	Eukaryota (eukaryotes) (3)
	Archaea (1)
	Riboviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (76)
	SOLUTION NMR (9)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (87)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (14)
	1.5 - 2.0 (20)
	2.0 - 2.5 (25)
	2.5 - 3.0 (13)
	3.0 - 3.5 (3)
	> 4.5 (2)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (10)
	2010 - 2014 (25)
	2015 - 2019 (37)
	2020 - 2024 (8)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (8)
	Ligases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (66)
	Cyclic (23)
	Dihedral (4)

SCOP Classification

	All beta proteins (13)
	All alpha proteins (9)
	Artifacts (7)
	Alpha and beta proteins (a+b) (7)
	Alpha and beta proteins (a/b) (2)
	Designed proteins (2)

AllSelected

1 to 25 of 87 Structures

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1CQU \| pdb_00001cqu	Download File View File

SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L9

Hua, Y., Kuhlman, B., Hoffman, D., Raleigh, D.P.

(1999) J Mol Biology 289: 167-174

Released	2002-04-27
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	50S RIBOSOMAL PROTEIN L9 (protein)

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1JML \| pdb_00001jml	Download File View File

Conversion of Monomeric Protein L to an Obligate Dimer by Computational Protein Design

O'Neill, J.W., Kuhlman, B., Kim, D.E., Zhang, K.Y.J., Baker, D.

(2001) Proc Natl Acad Sci U S A 98: 10687-10691

Released	2001-10-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Finegoldia magna ATCC 29328
Macromolecule	Protein L (protein)
Unique Ligands	ZN

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1KH0 \| pdb_00001kh0	Download File View File

Accurate Computer Base Design of a New Backbone Conformation in the Second Turn of Protein L

O'Neill, J.W., Kuhlman, B., Kim, D.E., Zhang, K.Y., Baker, D.

(2002) J Mol Biology 315: 471-477

Released	2002-01-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Finegoldia magna ATCC 29328
Macromolecule	protein L (protein)

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1MHX \| pdb_00001mhx	Download File View File

Crystal Structures of the redesigned protein G variant NuG1

Nauli, S., Kuhlman, B., Le Trong, I., Stenkamp, R.E., Teller, D.C., Baker, D.

(2002) Protein Sci 11: 2924-2931

Released	2002-09-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Finegoldia magna ATCC 29328
Macromolecule	immunoglobulin-binding protein G (protein)

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1MI0 \| pdb_00001mi0	Download File View File

Crystal Structure of the redesigned protein G variant NuG2

Nauli, S., Kuhlman, B., Le Trong, I., Stenkamp, R.E., Teller, D.C., Baker, D.

(2002) Biochemistry 11: 2924-2931

Released	2002-09-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Finegoldia magna ATCC 29328
Macromolecule	immunoglobulin-binding protein G (protein)

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1QYS \| pdb_00001qys	Download File View File

Crystal structure of Top7: A computationally designed protein with a novel fold

Kuhlman, B., Dantas, G., Ireton, G.C., Varani, G., Stoddard, B.L., Baker, D.

(2003) Science 302: 1364-1368

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	TOP7 (protein)

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1VJQ \| pdb_00001vjq	Download File View File

Designed protein based on backbone conformation of procarboxypeptidase-A (1AYE) with sidechains chosen for maximal predicted stability.

Merritt, E.A., Baker, D., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.098 Å
Macromolecule	designed protein (protein)

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2G83 \| pdb_00002g83	Download File View File

Structure of activated G-alpha-i1 bound to a nucleotide-state-selective peptide: Minimal determinants for recognizing the active form of a G protein alpha subunit

Johnston, C.A., Ramer, J.K., Blaesius, R., Kuhlman, B., Arshavsky, V.Y., Siderovski, D.P.

(2006) Biochemistry 45: 11390-11400

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(i), alpha-1 subunit (protein) KB-1753 phage display peptide (protein)
Unique Ligands	ALF, GDP, MG

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2GJF \| pdb_00002gjf	Download File View File

NMR structure of the computationally designed procarboxypeptidase-A (1AYE) domain

Reichow, S.

(2007) J Mol Biology 366: 1209-1221

Released	2007-01-16
Method	SOLUTION NMR
Macromolecule	DESIGNED PROTEIN (protein)

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2GJH \| pdb_00002gjh	Download File View File

NMR Structure of CFr (C-terminal fragment of computationally designed novel-topology protein Top7)

Dantas, G.

(2006) J Mol Biology 362: 1004-1024

Released	2006-10-17
Method	SOLUTION NMR
Macromolecule	DESIGNED PROTEIN (protein)

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2LCH \| pdb_00002lch	Download File View File

Solution NMR Structure of a Protein With a Redesigned Hydrophobic Core, Northeast Structural Genomics Consortium Target OR38

Mills, J.L., Murphy, G., Miley, M., Machius, M., Kuhlman, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2011-05-25
Method	SOLUTION NMR
Organisms	Thermotoga maritima
Macromolecule	Protein OR38 (protein)

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2LSE \| pdb_00002lse	Download File View File

Solution NMR Structure of De Novo Designed Four Helix Bundle Protein, Northeast Structural Genomics Consortium (NESG) Target OR188

Sathyamoorthy, B., Pulavarti, S., Murphy, G., Mills, J.L., Eletski, A., Der, B.S., Machius, M.C., Kuhlman, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2012-06-27
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Four Helix Bundle Protein (protein)

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2N8I \| pdb_00002n8i	Download File View File

Solution NMR Structure of Designed Protein DA05, Northeast Structural Genomics Consortium (NESG) Target OR626

Xu, X., Eletsky, A., Federizon, J.F., Jacobs, T.M., Kuhlman, B., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2016) Science 352: 687-690

Released	2016-01-20
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Designed Protein DA05 (protein)

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2N8W \| pdb_00002n8w	Download File View File

Solution NMR Structure of Designed Protein DA05R1, Northeast Structural Genomics Consortium (NESG) Target OR690

Eletsky, A., Federizon, J.F., Xu, X., Pulavarti, S., Jacobs, T.M., Kuhlman, B., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

(2016) Science 352: 687-690

Released	2015-11-25
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Designed Protein DA05R1 (protein)

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2OM2 \| pdb_00002om2	Download File View File

Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14

Siderovski, D.P., Kimple, R.J.

(2007) J Mol Biology 371: 1392-1404

Released	2007-07-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Guanine nucleotide-binding protein G(i), alpha-1 subunit (protein) Regulator of G-protein signalling 14 GoLoco motif peptide (protein)
Unique Ligands	GDP, MG

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2RB8 \| pdb_00002rb8	Download File View File

High resolution design of a protein loop

Hu, X., Wang, H., Ke, H., Kuhlman, B.

(2007) Proc Natl Acad Sci U S A 104: 17668-17673

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Tenascin (protein)

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2RBL \| pdb_00002rbl	Download File View File

High resolution design of a protein loop

Hu, X., Wang, H., Ke, H., Kuhlman, B.

(2007) Proc Natl Acad Sci U S A 104: 17668-17673

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Tenascin (protein)

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2WKP \| pdb_00002wkp	Download File View File

Structure of a photoactivatable Rac1 containing Lov2 Wildtype

Wu, Y.I., Frey, D., Lungu, O.I., Jaehrig, A., Schlichting, I., Kuhlman, B., Hahn, K.M.

(2009) Nature 461: 104

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Avena sativa Homo sapiens
Macromolecule	NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 (protein)
Unique Ligands	CA, FMN, GTP, MG

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2WKQ \| pdb_00002wkq	Download File View File

Structure of a photoactivatable Rac1 containing the Lov2 C450A Mutant

Wu, Y.I., Frey, D., Lungu, O.I., Jaehrig, A., Schlichting, I., Kuhlman, B., Hahn, K.M.

(2009) Nature 461: 104

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Avena sativa Homo sapiens
Macromolecule	NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 (protein)
Unique Ligands	CL, EDO, FMN, GTP, MG

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2WKR \| pdb_00002wkr	Download File View File

Structure of a photoactivatable Rac1 containing the Lov2 C450M Mutant

Wu, Y.I., Frey, D., Lungu, O.I., Jaehrig, A., Schlichting, I., Kuhlman, B., Hahn, K.M.

(2009) Nature 461: 104

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Avena sativa Homo sapiens
Macromolecule	NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 (protein)
Unique Ligands	CL, FMN, GTP, MG

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2XNS \| pdb_00002xns	Download File View File

Crystal Structure Of Human G alpha i1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of RGS14

Bosch, D., Sammond, D.W., Butterfoss, G.L., Machius, M., Siderovski, D.P., Kuhlman, B.

(2011) J Am Chem Soc 133: 4190

Released	2011-06-08
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Homo sapiens
Macromolecule	GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1 (protein) REGULATOR OF G-PROTEIN SIGNALING 14 (protein)
Unique Ligands	GDP, SO4, SRT