RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Li, S.Y."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (3)
	Streptomyces venezuelae (3)
	Lycium barbarum (2)
	Streptomyces albogriseolus 1-36 (2)
	Homo sapiens (1)
	Rattus norvegicus (1)

Taxonomy

	Bacteria (8)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2020 - 2024 (8)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (4)
	Ligases (3)
	Transferases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (5)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a/b) (1)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

1T6W	Download File View File

RATIONAL DESIGN OF A CALCIUM-BINDING ADHESION PROTEIN NMR, 20 STRUCTURES

Yang, W., Wilkins, A.L., Ye, Y., Liu, Z.-R., Urbauer, J.L., Kearney, A., van der Merwe, P.A., Yang, J.J.

(2005) J Am Chem Soc 127: 2085-2093

Released	2005-02-15
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	hypothetical protein XP_346638 (protein)
Unique Ligands	CA

Explore in 3D

3WJA	Download File View File

The crystal structure of human cytosolic NADP(+)-dependent malic enzyme in apo form

Li, S.-Y., Chen, M.-C., Yang, P.-C., Chan, N.-L., Liu, J.-H., Hung, H.-C.

(2014) Biochim Biophys Acta 1844: 1773-1783

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.548 Å
Organisms	Homo sapiens
Macromolecule	NADP-dependent malic enzyme (protein)

Explore in 3D

7QH8	Download File View File

CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE

Dawson, A., Robinson, D.A., Tamjar, J., Wyatt, P., Green, S.

(2022) Nat Commun 13: 5992-5992

Released	2022-10-19
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Lysine--tRNA ligase 1 (protein)
Unique Ligands	GOL, LYS

Explore in 3D

7QHN	Download File View File

CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE and an inhibitor

Dawson, A., Robinson, D.A., Tamjar, J., Wyatt, P., Green, S.

(2022) Nat Commun 13: 5992-5992

Released	2022-10-19
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Lysine--tRNA ligase 1 (protein)
Unique Ligands	C6I, LYS

Explore in 3D

7QI8	Download File View File

CRYSTAL STRUCTURE OF LYSYL-TRNA SYNTHETASE FROM Mycobacterium tuberculosis COMPLEXED WITH L-LYSINE AND INHIBITOR

Dawson, A., Robinson, D.A., Tamjar, J., Wyatt, P., Green, S.

(2022) Nat Commun 13: 5992-5992

Released	2022-10-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Lysine--tRNA ligase 1 (protein)
Unique Ligands	DD0, LYS

Explore in 3D

7XBM	Download File View File

Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	CAC, GOL, HEM, PEG, SO4

Explore in 3D

7XBN	Download File View File

Crystal Structure of YC-17-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	GOL, HEM, PEG, PXI

Explore in 3D

7XBO	Download File View File

Crystal Structure of 10-dml-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	E4H, GOL, HEM, PEG

Explore in 3D

8W53	Download File View File

Crystal structure of LbUGT in complex with UDP

Hu, D., Wang, G.Q.

(2024) Nat Commun 15: 4588-4588

Released	2024-05-22
Method	X-RAY DIFFRACTION 2.42816165393 Å
Organisms	Lycium barbarum
Macromolecule	Glycosyltransferase (protein)
Unique Ligands	GOL, UDP

Explore in 3D

8WP5	Download File View File

Crystal structure of LbUGT1 in complex with UDP

Hu, D., Wang, G.Q.

(2024) Nat Commun 15: 4588-4588

Released	2024-05-22
Method	X-RAY DIFFRACTION 2.57005953651 Å
Organisms	Lycium barbarum
Macromolecule	Glycosyltransferase (protein)
Unique Ligands	CL, UDP

Explore in 3D

8YND	Download File View File

ATP-grasp peptide ligase from Streptomyces

Xu, M.J., Yan, Y.Q.

(2025) ACS Catal 15: 2550-2560

Released	2025-02-19
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Streptomyces albogriseolus 1-36
Macromolecule	ATP-grasp peptide ligase (protein)

Explore in 3D

8YNQ	Download File View File

ATP-grasp peptide ligase from Streptomyces

Xu, M.J., Yan, Y.Q.

(2025) ACS Catal 15: 2550-2560

Released	2025-02-19
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Streptomyces albogriseolus 1-36
Macromolecule	ATP-grasp peptide ligase (protein)
Unique Ligands	ADP, AMP, ANP, GOL, PEG, TRS