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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Marty, M.T."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (10)
	synthetic construct (6)
	Clostridioides difficile R20291 (5)
	Pisum sativum (2)
	Gallus gallus (1)
	Mycolicibacterium smegmatis MC2 155 (1)

Taxonomy

	Riboviria (10)
	Bacteria (6)
	other sequences (6)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (4)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (17)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (5)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Cyclic (11)
	Asymmetric (8)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 19 of 19 Structures

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5DS1 \| pdb_00005ds1	Download File View File

Core domain of the class II small heat-shock protein HSP 17.7 from Pisum sativum

Hochberg, G.K.A., Laganoswky, A., Allison, T.A., Shepherd, D.A., Benesch, J.L.P.

(2018) Science 359: 930-935

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Pisum sativum
Macromolecule	17.1 kDa class II heat shock protein (protein)

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5DS2 \| pdb_00005ds2	Download File View File

Core domain of the class I small heat-shock protein HSP 18.1 from Pisum sativum

Shepherd, D.A., Laganowsky, A., Allison, T.M., Hochberg, G.K.A., Benesch, J.L.P.

(2018) Science 359: 930-935

Released	2016-09-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pisum sativum
Macromolecule	18.1 kDa class I heat shock protein (protein)
Unique Ligands	SO4

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6WTT \| pdb_00006wtt	Download File View File

Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376

Sacco, M., Ma, C., Chen, Y., Wang, J.

(2020) Cell Res 30: 678-692

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	B1S, CL, GOL, K36, MG, PEG

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6X0O \| pdb_00006x0o	Download File View File

Single-Particle Cryo-EM Structure of Arabinosyltransferase EmbB from Mycobacterium smegmatis

Tan, Y.Z., Rodrigues, J., Keener, J.E., Zheng, R.B., Brunton, R., Kloss, B., Giacometti, S.I., Rosario, A.L., Zhang, L., Niederweis, M., Clarke, O.B., Lowary, T.L., Marty, M.T., Archer, M., Potter, C.S., Carragher, B., Mancia, F.

(2020) Nat Commun 11: 3396-3396

Released	2020-06-10
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Integral membrane indolylacetylinositol arabinosyltransferase EmbB (protein)
Unique Ligands	CA, LHG

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6XA4 \| pdb_00006xa4	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW241 (protein)
Unique Ligands	GOL

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6XBG \| pdb_00006xbg	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW246

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW246 (protein)
Unique Ligands	GOL, NA

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6XBH \| pdb_00006xbh	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW247 (protein)
Unique Ligands	GOL, NA

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6XBI \| pdb_00006xbi	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) inhibitor UAW248 (protein)
Unique Ligands	DMS, GOL, NA

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6XFN \| pdb_00006xfn	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW243

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2020) Sci Adv 6:

Released	2020-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) UAW243 (protein)
Unique Ligands	GOL

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7JRN \| pdb_00007jrn	Download File View File

Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617

Sacco, M., Ma, C., Wang, J., Chen, Y.

(2021) ACS Cent Sci 7: 1245-1260

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	SO4, TTT, ZN

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7KX5 \| pdb_00007kx5	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A

Sacco, M., Wang, J., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2020-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	GOL, X7V

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7MJS \| pdb_00007mjs	Download File View File

Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3

Cater, R.J., Chua, G.L., Erramilli, S.K., Keener, J.E., Choy, B.C., Tokarz, P., Chin, C.F., Quek, D.Q.Y., Kloss, B., Pepe, J.G., Parisi, G., Wong, B.H., Clarke, O.B., Marty, M.T., Kossiakoff, A.A., Khelashvili, G., Silver, D.L., Mancia, F.

(2021) Nature 595: 315-319

Released	2021-06-16
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Gallus gallus synthetic construct
Macromolecule	2AG3 Fab heavy chain (protein) 2AG3 Fab light chain (protein) Major Facilitator Superfamily Domain containing 2A (protein)
Unique Ligands	NAG, ZGS

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7RCW \| pdb_00007rcw	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	ACT, GOL, PEG, ZN, ZZ7

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7RCX \| pdb_00007rcx	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, SO4, ZN

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7RCY \| pdb_00007rcy	Download File View File

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	RB6, ZN

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7RCZ \| pdb_00007rcz	Download File View File

Crystal structure of C. difficile SpoVD in complex with ampicillin

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Stage V sporulation protein D (Sporulation specific penicillin-binding protein) (protein)
Unique Ligands	EPE, PEG, POL, SO4, ZN, ZZ7

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7RD0 \| pdb_00007rd0	Download File View File

Crystal structure of C. difficile penicillin-binding protein 3 in apo form

Sacco, M., Chen, Y.

(2022) Nat Commun 13: 4370-4370

Released	2022-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridioides difficile R20291
Macromolecule	Penicillin-binding protein (protein)
Unique Ligands	GOL, ZN

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7RN0 \| pdb_00007rn0	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R

Sacco, M., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2021-08-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	5ZB, GOL

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7RN1 \| pdb_00007rn1	Download File View File

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-62-2R

Sacco, M., Chen, Y.

(2021) J Am Chem Soc 143: 20697-20709

Released	2021-09-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	5ZF, GOL, SO4

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5DS1 | pdb_00005ds1

Core domain of the class II small heat-shock protein HSP 17.7 from Pisum sativum

5DS2 | pdb_00005ds2

Core domain of the class I small heat-shock protein HSP 18.1 from Pisum sativum

6WTT | pdb_00006wtt

Crystals Structure of the SARS-CoV-2 (COVID-19) main protease with inhibitor GC-376

6X0O | pdb_00006x0o

Single-Particle Cryo-EM Structure of Arabinosyltransferase EmbB from Mycobacterium smegmatis

6XA4 | pdb_00006xa4

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW241

6XBG | pdb_00006xbg

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW246

6XBH | pdb_00006xbh

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247

6XBI | pdb_00006xbi

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW248

6XFN | pdb_00006xfn

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with UAW243

7JRN | pdb_00007jrn

Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617

7KX5 | pdb_00007kx5

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with noncovalent inhibitor Jun8-76-3A

7MJS | pdb_00007mjs

Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3

7RCW | pdb_00007rcw

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ampicillin

7RCX | pdb_00007rcx

Crystal structure of C. difficile penicillin-binding protein 2 in apo form

7RCY | pdb_00007rcy

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

7RCZ | pdb_00007rcz

Crystal structure of C. difficile SpoVD in complex with ampicillin

7RD0 | pdb_00007rd0

Crystal structure of C. difficile penicillin-binding protein 3 in apo form

7RN0 | pdb_00007rn0

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-57-3R

7RN1 | pdb_00007rn1

Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor Jun9-62-2R

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5DS1 | pdb_00005ds1

5DS2 | pdb_00005ds2

6WTT | pdb_00006wtt

6X0O | pdb_00006x0o

6XA4 | pdb_00006xa4

6XBG | pdb_00006xbg

6XBH | pdb_00006xbh

6XBI | pdb_00006xbi

6XFN | pdb_00006xfn

7JRN | pdb_00007jrn

7KX5 | pdb_00007kx5

7MJS | pdb_00007mjs

7RCW | pdb_00007rcw

7RCX | pdb_00007rcx

7RCY | pdb_00007rcy

7RCZ | pdb_00007rcz

7RD0 | pdb_00007rd0

7RN0 | pdb_00007rn0

7RN1 | pdb_00007rn1