RCSB PDB: Search

3T6C \| pdb_00003t6c	Download File View File

Crystal structure of an enolase from pantoea ananatis (efi target efi-501676) with bound d-gluconate and mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-08-31
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Pantoea ananatis LMG 20103
Macromolecule	Putative ManD family dehydratase (protein)
Unique Ligands	CL, EDO, GCO, MG, UNX

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3THU \| pdb_00003thu	Download File View File

Crystal structure of an enolase from sphingomonas sp. ska58 (efi target efi-501683) with bound mg

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sphingomonas sp. SKA58
Macromolecule	Mandelate racemase / muconate lactonizing enzyme family protein (protein)
Unique Ligands	CL, GOL, MG, UNX

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3TJ4 \| pdb_00003tj4	Download File View File

Crystal structure of an enolase from agrobacterium tumefaciens (efi target efi-502087) no mg

Vetting, M.W., Bouvier, J.T., Wasserman, S.R., Morisco, L.L., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Mandelate racemase (protein)
Unique Ligands	CL, GOL, PO4

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3TJI \| pdb_00003tji	Download File View File

CRYSTAL STRUCTURE OF AN ENOLASE FROM ENTEROBACTER sp. 638 (EFI TARGET EFI-501662) with BOUND MG

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterobacter sp. 638
Macromolecule	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein (protein)
Unique Ligands	CL, GOL, MG

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3UGV \| pdb_00003ugv	Download File View File

Crystal structure of an enolase from alpha pretobacterium bal199 (EFI TARGET EFI-501650) with bound MG

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-11-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	alpha proteobacterium BAL199
Macromolecule	Enolase (protein)
Unique Ligands	CL, MG, NI

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3V3W \| pdb_00003v3w	Download File View File

Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-01-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Starvation sensing protein rspA (protein)
Unique Ligands	CL, GOL, MG, NHE

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3V4B \| pdb_00003v4b	Download File View File

Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and L-tartrate

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R.D., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Al Obaidi, N., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Cellvibrio japonicus Ueda107
Macromolecule	Starvation sensing protein rspA (protein)
Unique Ligands	CL, MG, TLA

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4DN1 \| pdb_00004dn1	Download File View File

Crystal structure of an ENOLASE (mandelate racemase subgroup member) from Agrobacterium tumefaciens (target EFI-502088) with bound mg and formate

Vetting, M.W., Toro, R., Bhosle, R., Bouvier, J.T., Wasserman, S.R., Morisco, L.L., Sojitra, S., Al Obaidi, N.F., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Isomerase/lactonizing enzyme (protein)
Unique Ligands	CL, FMT, MG

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4DO7 \| pdb_00004do7	Download File View File

Crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group c2

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Seidel, R.D., Hillerich, B., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Al Obaidi, N.F., Zencheck, W.D., Imker, H.J., Gerlt, J.A., Raushel, F.M., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-02-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Burkholderia multivorans ATCC 17616
Macromolecule	Amidohydrolase 2 (protein)
Unique Ligands	SO4, ZN

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4DW8 \| pdb_00004dw8	Download File View File

Crystal structure of a haloacid dehalogenase-like hydrolase (Target EFI-900331) from Bacteroides thetaiotaomicron with bound Na crystal form I

Vetting, M.W., Wasserman, S.R., Morisco, L.L., Sojitra, S., Allen, K.N., Dunaway-Mariano, D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 1.502 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Haloacid dehalogenase-like hydrolase (protein)
Unique Ligands	NA, UNL

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4DWO \| pdb_00004dwo	Download File View File

Crystal structure of a haloacid dehalogenase-like hydrolase (Target EFI-900331) from Bacteroides thetaiotaomicron with bound Mg crystal form II

Vetting, M.W., Wasserman, S.R., Morisco, L.L., Sojitra, S., Allen, K.N., Dunaway-Mariano, D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Haloacid dehalogenase-like hydrolase (protein)
Unique Ligands	GOL, MG

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4DX3 \| pdb_00004dx3	Download File View File

Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue

Vetting, M.W., Bouvier, J.T., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Mandelate racemase / muconate lactonizing enzyme family protein (protein)
Unique Ligands	CL, GOL

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4DXK \| pdb_00004dxk	Download File View File

Crystal structure of an enolase (mandelate racemase subgroup, target EFI-502086) from Agrobacterium tumefaciens, with a succinimide residue, na and phosphate

Vetting, M.W., Bouvier, J.T., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Mandelate racemase / muconate lactonizing enzyme family protein (protein)
Unique Ligands	NA, PO4

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4DYE \| pdb_00004dye	Download File View File

Crystal structure of an enolase (putative sugar isomerase, target efi-502095) from streptomyces coelicolor, no mg, ordered loop

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces coelicolor
Macromolecule	isomerase (protein)
Unique Ligands	EDO, GOL

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4DYK \| pdb_00004dyk	Download File View File

Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Chamala, S., Kar, A., Lafleur, J., Villigas, G., Evans, B., Hammonds, J., Gizzi, A., Zencheck, W.D., Hillerich, B., Love, J., Seidel, R.D., Bonanno, J.B., Raushel, F.M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	AMIDOHYDROLASE (protein)
Unique Ligands	GOL, MG, ZN

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4DZH \| pdb_00004dzh	Download File View File

Crystal structure of an adenosine deaminase from xanthomonas campestris (target nysgrc-200456) with bound zn

Vetting, M.W., Toro, R., Bhosle, R., Wasserman, S.R., Morisco, L.L., Sojitra, S., Chamala, S., Kar, A., Lafleur, J., Villigas, G., Evans, B., Hammonds, J., Gizzi, A., Zencheck, W.D., Hillerich, B., Love, J., Seidel, R.D., Bonanno, J.B., Raushel, F.M., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.552 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	AMIDOHYDROLASE (protein)
Unique Ligands	GOL, MG, UNL, ZN

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4E69 \| pdb_00004e69	Download File View File

Crystal structure of a sugar kinase (target EFI-502132) from Oceanicola granulosus, unliganded structure

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Oceanicola granulosus HTCC2516
Macromolecule	2-dehydro-3-deoxygluconokinase (protein)
Unique Ligands	CL, EDO, GOL

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4EBU \| pdb_00004ebu	Download File View File

Crystal structure of a sugar kinase (Target EFI-502312) from Oceanicola granulosus, with bound AMP/ADP crystal form I

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oceanicola granulosus HTCC2516
Macromolecule	2-dehydro-3-deoxygluconokinase (protein)
Unique Ligands	ADP, AMP, CL

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4EUM \| pdb_00004eum	Download File View File

Crystal structure of a sugar kinase (Target EFI-502132) from Oceanicola granulosus with bound AMP, crystal form II

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-05-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Oceanicola granulosus HTCC2516
Macromolecule	2-dehydro-3-deoxygluconokinase (protein)
Unique Ligands	AMP, CL, MG

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4EUN \| pdb_00004eun	Download File View File

Crystal structure of a sugar kinase (Target EFI-502144 from Janibacter sp. HTCC2649), unliganded structure

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-05-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Janibacter sp. HTCC2649
Macromolecule	thermoresistant glucokinase (protein)
Unique Ligands	SO4

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4F4R \| pdb_00004f4r	Download File View File

Crystal structure of D-mannonate dehydratase homolog from Chromohalobacter salexigens (Target EFI-502114), with bound NA, ordered loop

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI), Medical Structural Genomics of Pathogenic Protozoa (MSGPP)

To be published

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chromohalobacter israelensis DSM 3043
Macromolecule	D-mannonate dehydratase (protein)
Unique Ligands	CL, GOL, NA

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4G81 \| pdb_00004g81	Download File View File

Crystal structure of a hexonate dehydrogenase ortholog (target efi-506402 from salmonella enterica, unliganded structure

Vetting, M.W., Wichelecki, D., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Macromolecule	Putative hexonate dehydrogenase (protein)
Unique Ligands	CL, EDO, GOL

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4G8T \| pdb_00004g8t	Download File View File

Crystal structure of a glucarate dehydratase related protein, from actinobacillus succinogenes, target EFI-502312, with sodium and sulfate bound, ordered loop

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Actinobacillus succinogenes 130Z
Macromolecule	Glucarate dehydratase (protein)
Unique Ligands	DTT, DTU, GOL, NA, SO4

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4G9B \| pdb_00004g9b	Download File View File

Crystal structure of beta-phosphoglucomutase homolog from escherichia coli, target efi-501172, with bound mg, open lid

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Dunaway-Mariano, D., Allen, K.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-phosphoglucomutase (protein)
Unique Ligands	CL, GOL, MG, SO4, UNL

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4G9H \| pdb_00004g9h	Download File View File

Crystal structure of glutahtione s-transferase homolog from yersinia pestis, target EFI-501894, with bound glutathione

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Yersinia pestis
Macromolecule	Glutathione S-transferase (protein)
Unique Ligands	GOL, GSH

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3T6C | pdb_00003t6c

3THU | pdb_00003thu

3TJ4 | pdb_00003tj4

3TJI | pdb_00003tji

3UGV | pdb_00003ugv

3V3W | pdb_00003v3w

3V4B | pdb_00003v4b

4DN1 | pdb_00004dn1

4DO7 | pdb_00004do7

4DW8 | pdb_00004dw8

4DWO | pdb_00004dwo

4DX3 | pdb_00004dx3

4DXK | pdb_00004dxk

4DYE | pdb_00004dye

4DYK | pdb_00004dyk

4DZH | pdb_00004dzh

4E69 | pdb_00004e69

4EBU | pdb_00004ebu

4EUM | pdb_00004eum

4EUN | pdb_00004eun

4F4R | pdb_00004f4r

4G81 | pdb_00004g81

4G8T | pdb_00004g8t

4G9B | pdb_00004g9b

4G9H | pdb_00004g9h