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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Paczia, N."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Synechococcus elongatus PCC 7942 = FACHB-805 (5)
	Escherichia coli K-12 (4)
	Methylorubrum extorquens AM1 (4)
	Denitrovibrio acetiphilus DSM 12809 (2)
	Paracoccus denitrificans PD1222 (2)
	Pseudomonas chlororaphis subsp. piscium (1)
	Pseudomonas migulae (1)

Taxonomy

Bacteria (19)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2020 - 2024 (17)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (6)
	Ligases (2)
	Lyases (2)
	Transferases (1)

Symmetry Type

	Cyclic (8)
	Dihedral (11)

AllSelected

1 to 19 of 19 Structures

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7AYG	Download File View File

oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP

Pfister, P., Burgener, S., Nattermann, M., Zarzycki, J., Erb, T.J.

(2021) ACS Catal 11: 5396-5404

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Putative oxalyl-CoA decarboxylase (Oxc, yfdU) (protein)
Unique Ligands	ADP, MG, TPP

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7B2E	Download File View File

quadruple mutant of oxalyl-CoA decarboxylase from Methylorubrum extorquens with bound TPP and ADP

Pfister, P., Burgener, S., Nattermann, M., Zarzycki, J., Erb, T.J.

(2021) ACS Catal 11: 5396-5404

Released	2021-04-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Putative oxalyl-CoA decarboxylase (Oxc, yfdU) (protein)
Unique Ligands	ADP, MG, TPP

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7QCW	Download File View File

Apo-structure of serine hydroxymethyltransferase (PbzB) involved in benzobactin biosynthesis in P. chlororaphis subsp. piscium DSM 21509

Czech, L., Bange, G.

(2022) Angew Chem Int Ed Engl 61: e202206106-e202206106

Released	2022-10-12
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Pseudomonas chlororaphis subsp. piscium
Macromolecule	Serine hydroxymethyltransferase (protein)

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8AFU	Download File View File

DaArgC - N-acetyl-gamma-glutamyl-phosphate Reductase of Denitrovibrio acetiphilus

Pfister, P., Nattermann, M., Zarzycki, J., Erb, T.J.

(2023) Nat Commun 14: 2682-2682

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Denitrovibrio acetiphilus DSM 12809
Macromolecule	N-acetyl-gamma-glutamyl-phosphate reductase (protein)
Unique Ligands	NA

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8AFV	Download File View File

DaArgC3 - Engineered Formyl Phosphate Reductase with 3 substitutions (S178V, G182V, L233I)

Pfister, P., Nattermann, M., Zarzycki, J., Erb, T.J.

(2023) Nat Commun 14: 2682-2682

Released	2023-04-05
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Denitrovibrio acetiphilus DSM 12809
Macromolecule	N-acetyl-gamma-glutamyl-phosphate reductase (protein)
Unique Ligands	NA

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8AN1	Download File View File

Structure of a first level Sierpinski triangle formed by a citrate synthase

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-21
Method	ELECTRON MICROSCOPY 3.93 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8BEI	Download File View File

Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942

Lo, Y.K., Bohn, S., Sendker, F.L., Schuller, J.M., Hochberg, G.

(2024) Nature 628: 894-900

Released	2024-02-28
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)

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8BP7	Download File View File

Citrate-bound hexamer of Synechococcus elongatus citrate synthase

Mais, C.-N., Sendker, F., Bange, G.

(2024) Nature 628: 894-900

Released	2024-04-24
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Citrate synthase (protein)
Unique Ligands	CIT, MG, SO4

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8CIW	Download File View File

Methylsuccinyl-CoA dehydrogenase from Pseudomonas migulae with bound FAD and (2S)-methylsuccinyl-CoA

Zarzycki, J., McLean, R., Erb, T.J.

(2023) Sci Adv 9: eadh4299-eadh4299

Released	2023-07-12
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Pseudomonas migulae
Macromolecule	(2S)-methylsuccinyl-CoA dehydrogenase (protein)
Unique Ligands	COA, FAD, FLC, P6G, ZKK

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8PN7	Download File View File

Engineered glycolyl-CoA carboxylase (G20R variant) with bound CoA

Zarzycki, J., Marchal, D.G., Schulz, L., Prinz, S., Erb, T.J.

(2023) ACS Synth Biol 12: 3521-3530

Released	2023-11-29
Method	ELECTRON MICROSCOPY 2.03 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Propionyl-CoA carboxylase alpha subunit (protein) Propionyl-CoA carboxylase beta chain (protein)
Unique Ligands	BTI, COA

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8PN8	Download File View File

Engineered glycolyl-CoA carboxylase (L100N variant) with bound CoA

Zarzycki, J., Marchal, D.G., Schulz, L., Prinz, S., Erb, T.J.

(2023) ACS Synth Biol 12: 3521-3530

Released	2023-11-29
Method	ELECTRON MICROSCOPY 2.31 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Propionyl-CoA carboxylase alpha subunit (protein) Propionyl-CoA carboxylase beta chain (protein)
Unique Ligands	BTI, COA

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8QMQ	Download File View File

Succinic semialdehyde dehydrogenase from E. coli with bound NAD+

He, H., Zarzycki, J., Erb, T.J.

(2024) Nat Commun 15: 8898-8898

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Succinate semialdehyde dehydrogenase [NAD(P)+] Sad (protein)
Unique Ligands	NAD

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8QMR	Download File View File

Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde

He, H., Zarzycki, J., Erb, T.J.

(2024) Nat Commun 15: 8898-8898

Released	2024-10-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Succinate semialdehyde dehydrogenase [NAD(P)+] Sad (protein)
Unique Ligands	NAD, SSN

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8QMS	Download File View File

Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+

He, H., Zarzycki, J., Erb, T.J.

(2024) Nat Commun 15: 8898-8898

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Succinate semialdehyde dehydrogenase [NAD(P)+] Sad (protein)
Unique Ligands	NAD

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8QMT	Download File View File

Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+, succinic semialdehyde

He, H., Zarzycki, J., Erb, T.J.

(2024) Nat Commun 15: 8898-8898

Released	2024-10-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Succinate semialdehyde dehydrogenase [NAD(P)+] Sad (protein)
Unique Ligands	NAD, SSN

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8RIO	Download File View File

Beta-keto acid cleavage enzyme from Paracoccus denitrificans

Marchal, D.G., Zarzycki, J., Erb, T.J.

Nat Commun

Released	2025-01-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	3-keto-5-aminohexanoate cleavage protein (protein)
Unique Ligands	PRO, ZN

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8RIP	Download File View File

Beta-keto acid cleavage enzyme from Paracoccus denitrificans with bound malonate and Coenzyme A

Marchal, D.G., Zarzycki, J., Erb, T.J.

Nat Commun

Released	2025-01-01
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	3-keto-5-aminohexanoate cleavage protein (protein)
Unique Ligands	COA, MLI, ZN