RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Podust, L.M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 112 Structures.

Refinements

Structure Determination Methodology

experimental (112)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (20)
	Streptomyces venezuelae (15)
	Trypanosoma cruzi (12)
	Micromonospora griseorubida (10)
	Naegleria fowleri (8)
	Mycobacterium tuberculosis (7)
	Entamoeba histolytica (6)
	Streptomyces coelicolor A3(2) (6)
	Streptomyces sp. 307-9 (6)
	Acanthamoeba castellanii str. Neff (4)

More...

Taxonomy

	Bacteria (72)
	Eukaryota (40)

Experimental Method

	X-RAY DIFFRACTION (111)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (112)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (52)
	2.0 - 2.5 (36)
	2.5 - 3.0 (16)
	3.0 - 3.5 (4)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (34)
	2010 - 2014 (41)
	2015 - 2019 (13)
	2020 - 2024 (15)

Enzyme Classification Name

	Oxidoreductases (78)
	Hydrolases (3)
	Ligases (3)
	Transferases (1)

Membrane Protein Annotation

OPM (8)

Symmetry Type

	Asymmetric (87)
	Cyclic (28)

SCOP Classification

	All alpha proteins (80)
	Artifacts (24)
	Coiled coil proteins (2)
	Alpha and beta proteins (a/b) (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 112 Structures

Page 1 of 5

Sort by

Explore in 3D

1CI6 \| pdb_00001ci6	Download File View File

TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER

Podust, L.M., Kim, Y.

(2001) J Biological Chem 276: 505-513

Released	2000-12-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	TRANSCRIPTION FACTOR ATF-4 (protein) TRANSCRIPTION FACTOR C/EBP BETA (protein)
Unique Ligands	BME, FE

Explore in 3D

1E9X \| pdb_00001e9x	Download File View File

Cytochrome P450 14 alpha-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with 4-phenylimidazole

Podust, L.M., Poulos, T.L., Waterman, M.R.

(2001) Proc Natl Acad Sci U S A 98: 3068

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	CYTOCHROME P450 51-LIKE RV0764C (protein)
Unique Ligands	HEM, PIM

Explore in 3D

1EA1 \| pdb_00001ea1	Download File View File

Cytochrome P450 14 alpha-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with fluconazole

Podust, L.M., Poulos, T.L., Waterman, M.R.

(2001) Proc Natl Acad Sci U S A 98: 3068

Released	2000-11-06
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	CYTOCHROME P450 51-LIKE RV0764C (protein)
Unique Ligands	HEM, TPF

Explore in 3D

1GWI \| pdb_00001gwi	Download File View File

The 1.92 A structure of Streptomyces coelicolor A3(2) CYP154C1: A new monooxygenase that functionalizes macrolide ring systems

Podust, L.M., Kim, Y., Arase, M., Neely, B.A., Beck, B.J., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2003) J Biological Chem 278: 12214

Released	2003-01-29
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	CYTOCHROME P450 154C1 (protein)
Unique Ligands	HEM, SO4

Explore in 3D

1H5Z \| pdb_00001h5z	Download File View File

CYTOCHROME P450 14 ALPHA-STEROL DEMETHYLASE (CYP51) FROM MYCOBACTERIUM TUBERCULOSIS IN FERRIC LOW-SPIN STATE

Podust, L.M., Arase, M., Waterman, M.R.

(2004) Structure 12: 1937

Released	2003-10-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	CYTOCHROME P450 51 (protein)
Unique Ligands	FE2, HEM

Explore in 3D

1JNM \| pdb_00001jnm	Download File View File

Crystal Structure of the Jun/CRE Complex

Kim, Y., Podust, L.M.

To be published

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE C-JUN (protein) 5'-D(CPGPTPCPGPAPTPGPAPCPGPTPCPAPTPCPGPAPCPG)-3' (nucleic acid)

Explore in 3D

1ODO \| pdb_00001odo	Download File View File

1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2)

Podust, L.M., Kim, Y., Arase, M., Bach, H., Sherman, D.H., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2004) Protein Sci 13: 255

Released	2004-01-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	PUTATIVE CYTOCHROME P450 154A1 (protein)
Unique Ligands	HEM, PIM

Explore in 3D

1S1F \| pdb_00001s1f	Download File View File

Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways

Zhao, B., Lamb, D.C., Lei, L., Sundaramoorthy, M., Podust, L.M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	GOL, HEM, HG, MLA, PIM

Explore in 3D

1SE6 \| pdb_00001se6	Download File View File

Crystal Structure of Streptomyces Coelicolor A3(2) CYP158A2 from antibiotic biosynthetic pathways

Zhao, B., Lamb, D.C., Lei, L., Sundaramoorthy, M., Podust, L.M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	HEM, MES, SPK

Explore in 3D

1T93 \| pdb_00001t93	Download File View File

Evidence for Multiple Substrate Recognition and Molecular Mechanism of C-C reaction by Cytochrome P450 CYP158A2 from Streptomyces Coelicolor A3(2)

Zhao, B., Sundaramoorthy, M., Waterman, M.R.

(2005) J Biological Chem 280: 11599-11607

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	FLV, HEM

Explore in 3D

1U13 \| pdb_00001u13	Download File View File

Crystal structure analysis of the C37L/C151T/C442A-triple mutant of CYP51 from Mycobacterium tuberculosis

Podust, L.M., Yermalitskaya, L.V., Kim, Y., Waterman, M.R.

To be published

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cytochrome P450 51 (protein)
Unique Ligands	HEM

Explore in 3D

1X8V \| pdb_00001x8v	Download File View File

Estriol-bound and ligand-free structures of sterol 14alpha-demethylase (CYP51)

Podust, L.M., Yermalitskaya, L.V., Lepesheva, G.I., Podust, V.N., Dalmasso, E.A., Waterman, M.R.

(2004) Structure 12: 1937-1945

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Cytochrome P450 51 (protein)
Unique Ligands	ESL, HEM

Explore in 3D

2BF4 \| pdb_00002bf4	Download File View File

A second FMN-binding site in yeast NADPH-cytochrome P450 reductase suggests a novel mechanism of electron transfer by diflavin reductases.

Podust, L.M., Lepesheva, G.I., Kim, Y., Yermalitskaya, L.V., Yermalitsky, V.N., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2006) Structure 14: 51

Released	2006-01-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NADPH-CYTOCHROME P450 REDUCTASE (protein)
Unique Ligands	FAD, FMN, NAP, SO4

Explore in 3D

2BN4 \| pdb_00002bn4	Download File View File

A second FMN-binding site in yeast NADPH-cytochrome P450 reductase suggests a novel mechanism of electron transfer by diflavin reductase

Podust, L.M., Lepesheva, G.I., Kim, Y., Yermalitskaya, L.V., Yermalitsky, V.N., Lamb, D.C., Kelly, S.L., Waterman, M.R.

(2006) Structure 14: 51

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NADPH CYTOCHROME P450 REDUCTASE (protein)
Unique Ligands	FAD, FMN, NAP

Explore in 3D

2BPO \| pdb_00002bpo	Download File View File

Crystal structure of the yeast CPR triple mutant: D74G, Y75F, K78A.

Yermalitskaya, L.V., Kim, Y., Waterman, M.R., Podust, L.M.

To be published

Released	2006-07-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	NADPH-CYTOCHROM P450 REDUCTASE (protein)
Unique Ligands	FAD, FMN, NAP, SO4

Explore in 3D

2BVJ \| pdb_00002bvj	Download File View File

Ligand-free structure of cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	BME, DTT, HEM

Explore in 3D

2BZ9 \| pdb_00002bz9	Download File View File

Ligand-free structure of sterol 14alpha-demethylase from Mycobacterium tuberculosis in P2(1) space group

Yermalitskaya, L.V., Waterman, M.R., Podust, L.M.

(2007) Antimicrob Agents Chemother 51: 3915

Released	2006-12-07
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	STEROL 14ALPHA-DEMETHYLASE (protein)
Unique Ligands	HEM

Explore in 3D

2C6H \| pdb_00002c6h	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI, SO4

Explore in 3D

2C7X \| pdb_00002c7x	Download File View File

Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, NRB

Explore in 3D

2CA0 \| pdb_00002ca0	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

To be published

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

Explore in 3D

2CD8 \| pdb_00002cd8	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

Explore in 3D

2CI0 \| pdb_00002ci0	Download File View File

High throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for CYP51 inhibitors

Podust, L.M., Kim, Y., Yermalitskaya, L.V., Von Kries, J.P., Waterman, M.R.

(2007) Antimicrob Agents Chemother 51: 3915

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CYTOCHROME P450 51 (protein)
Unique Ligands	1CM, HEM

Explore in 3D

2CIB \| pdb_00002cib	Download File View File

High throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for CYP51 inhibitors

Podust, L.M., Kim, Y., Yermalitskaya, L.V., Von Kries, J.P., Waterman, M.R.

(2007) Antimicrob Agents Chemother 51: 3915

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CYTOCHROME P450 51 (protein)
Unique Ligands	CM6, HEM

Explore in 3D

2D09 \| pdb_00002d09	Download File View File

A Role for Active Site Water Molecules and Hydroxyl Groups of Substrate for Oxygen Activation in Cytochrome P450 158A2

Zhao, B., Waterman, M.R.

(2005) J Biological Chem 280: 42188-42197

Released	2005-10-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	putative cytochrome P450 (protein)
Unique Ligands	FLV, HEM, OXY

Explore in 3D

2UUQ \| pdb_00002uuq	Download File View File

Crystal structure of CYP130 from Mycobacterium tuberculosis in the ligand-free form

Podust, L.M., Ortiz de Montellano, P.R.

(2008) J Biological Chem 283: 5069

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	CYTOCHROME P450 130 (protein)
Unique Ligands	HEM, IPA

1 to 25 of 112 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CI6 | pdb_00001ci6

1E9X | pdb_00001e9x

1EA1 | pdb_00001ea1

1GWI | pdb_00001gwi

1H5Z | pdb_00001h5z

1JNM | pdb_00001jnm

1ODO | pdb_00001odo

1S1F | pdb_00001s1f

1SE6 | pdb_00001se6

1T93 | pdb_00001t93

1U13 | pdb_00001u13

1X8V | pdb_00001x8v

2BF4 | pdb_00002bf4

2BN4 | pdb_00002bn4

2BPO | pdb_00002bpo

2BVJ | pdb_00002bvj

2BZ9 | pdb_00002bz9

2C6H | pdb_00002c6h

2C7X | pdb_00002c7x

2CA0 | pdb_00002ca0

2CD8 | pdb_00002cd8

2CI0 | pdb_00002ci0

2CIB | pdb_00002cib

2D09 | pdb_00002d09

2UUQ | pdb_00002uuq