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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rigden, D.J."

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Homo sapiens (10)
	Streptococcus pneumoniae (8)
	Trypanosoma brucei (6)
	Bacteroides thetaiotaomicron VPI-5482 (5)
	Geobacillus stearothermophilus (5)
	Saccharomyces cerevisiae (4)
	Anopheles gambiae (1)
	Arabidopsis thaliana (1)
	Bacillus subtilis (1)
	Bacteroides cellulosilyticus WH2 (1)

More...

Taxonomy

	Eukaryota (27)
	Bacteria (26)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (55)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (56)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (22)
	2.0 - 2.5 (18)
	2.5 - 3.0 (11)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (12)
	2005 - 2009 (11)
	2010 - 2014 (8)
	2015 - 2019 (9)
	2020 - 2024 (10)
	2025 - 2029 (1)

Enzyme Classification Name

	Lyases (16)
	Isomerases (6)
	Transferases (9)
	Hydrolases (5)
	Oxidoreductases (2)
	Ligases (1)
	Translocases (1)

Symmetry Type

	Asymmetric (29)
	Cyclic (19)
	Dihedral (7)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (19)
	All beta proteins (14)
	All alpha proteins (12)
	Artifacts (13)
	Alpha and beta proteins (a+b) (9)
	Multi-domain proteins (alpha and beta) (1)
	Peptides (1)

AllSelected

1 to 25 of 56 Structures

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1BQ3 \| pdb_00001bq3	Download File View File

SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE IN COMPLEX WITH INOSITOL HEXAKISPHOSPHATE

Rigden, D.J., Phillips, S.E.V., Fothergill-Gilmore, L.A.

(1999) J Mol Biology 289: 691-699

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHOGLYCERATE MUTASE 1) (protein)
Unique Ligands	IHP, SO4

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1BQ4 \| pdb_00001bq4	Download File View File

SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE IN COMPLEX WITH BENZENE HEXACARBOXYLATE

Rigden, D.J., Phillips, S.E.V., Fothergill-Gilmore, L.A.

(1999) J Mol Biology 289: 691-699

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHOGLYCERATE MUTASE 1) (protein)
Unique Ligands	BHC, SO4

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1EBB \| pdb_00001ebb	Download File View File

Bacillus stearothermophilus YhfR

Rigden, D.J., Jedrzejas, M.J.

(2002) J Mol Biology 315: 1129

Released	2002-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHATASE (protein)
Unique Ligands	GOL, SO4

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1GMZ \| pdb_00001gmz	Download File View File

Crystal structure of the D49 phospholipase A2 piratoxin III from Bothrops pirajai.

Rigden, D.J., Lee, W.H., Polikarpov, I.

(2003) Acta Crystallogr D Biol Crystallogr 59: 255

Released	2001-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bothrops pirajai
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	IPA

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1H2E \| pdb_00001h2e	Download File View File

BACILLUS STEAROTHERMOPHILUS PHOE (previously known as yhfr) in complex with phosphate

Rigden, D.J., Littlejohn, J.E., Jedrzejas, M.J.

(2003) J Mol Biology 325: 411

Released	2002-08-12
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHATASE (protein)
Unique Ligands	EDO, PO4

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1H2F \| pdb_00001h2f	Download File View File

BACILLUS STEAROTHERMOPHILUS PHOE (previously known as yhfr) in complex with trivanadate

Rigden, D.J., Littlejohn, J.E., Jedrzejas, M.J.

(2003) J Mol Biology 325: 411

Released	2002-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHATASE (protein)
Unique Ligands	PO4, VA3

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1O98 \| pdb_00001o98	Download File View File

1.4A CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM BACILLUS STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE

Rigden, D.J., Lamani, E., Littlejohn, J.E., Jedrzejas, M.J.

(2003) J Mol Biology 328: 909

Released	2003-05-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE (protein)
Unique Ligands	2PG, MN, SO4

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1O99 \| pdb_00001o99	Download File View File

CRYSTAL STRUCTURE OF THE S62A MUTANT OF PHOSPHOGLYCERATE MUTASE FROM BACILLUS STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE

Rigden, D.J., Lamani, E., Littlejohn, J.E., Jedrzejas, M.J.

(2003) J Mol Biology 328: 909

Released	2002-12-23
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE (protein)
Unique Ligands	2PG, MN, SO4

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1OEP \| pdb_00001oep	Download File View File

Structure of Trypanosoma brucei enolase reveals the inhibitory divalent metal site

Da Silva giotto, M.T., Navarro, M.V.A.S., Garratt, R.C., Rigden, D.J.

(2003) J Mol Biology 331: 653

Released	2003-04-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	ENOLASE (protein)
Unique Ligands	EDO, SO4, ZN

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1OJM \| pdb_00001ojm	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH UNSULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NGA

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1OJN \| pdb_00001ojn	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE TYR408PHE MUTANT WITH 6-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NG6

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1OJO \| pdb_00001ojo	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE TYR408PHE MUTANT WITH 4-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	ASG, GCD

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1OJP \| pdb_00001ojp	Download File View File

SPECIFICITY AND MECHANISM OF STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH 6-SULPHATED CHONDROITIN DISACCHARIDE

Rigden, D.J., Jedrzejas, M.J.

(2003) J Biological Chem 278: 50596

Released	2003-10-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCD, NG6

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1PKL \| pdb_00001pkl	Download File View File

THE STRUCTURE OF LEISHMANIA PYRUVATE KINASE

Rigden, D.J., Phillips, S.E.V., Michels, P.A.M., Fothergill-Gilmore, L.A.

(1999) J Mol Biology 291: 615-635

Released	1998-09-23
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Leishmania mexicana
Macromolecule	PROTEIN (PYRUVATE KINASE) (protein)
Unique Ligands	SO4

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1W3Y \| pdb_00001w3y	Download File View File

Crystal structure of S. pneumoniae hyaluronate lyase in complex with palmitoyl-vitamin C

Rigden, D.J., Jedrzejas, M.J.

(2004) J Biological Chem 279: 45990

Released	2004-08-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	PVC, SO4, XYL

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1XKM \| pdb_00001xkm	Download File View File

NMR structure of antimicrobial peptide distinctin in water

Amodeo, P., Raimondo, D., Andreotti, G., Motta, A., Scaloni, A.

(2005) Proc Natl Acad Sci U S A 102: 6309-6314

Released	2005-04-05
Method	SOLUTION NMR
Macromolecule	Distinctin chain A (protein) Distinctin chain B (protein)

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2BRP \| pdb_00002brp	Download File View File

Crystal structure of S. pneumoniae hyaluronate lyase in complex with W249b

Rigden, D.J., Jedrzejas, M.J.

(2006) Glycobiology 16: 757-765

Released	2006-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SIE, SO4, XLS

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2BRV \| pdb_00002brv	Download File View File

Crystal structure of Streptococcus Pneumoniae Hyaluronate Lyase from 70percent saturated malonate.

Rigden, D.J., Jedrzejas, M.J.

(2006) J Mol Biology 358: 1165

Released	2006-04-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	MLA

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2BRW \| pdb_00002brw	Download File View File

Crystal structure of Streptococcus Pneumoniae Hyaluronate Lyase from 30percent PEGMME.

Rigden, D.J., Littlejohn, J.E., Jedrzejas, M.J.

(2006) J Mol Biology 358: 1165

Released	2006-04-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SO4

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2PTW \| pdb_00002ptw	Download File View File

Crystal Structure of the T. brucei enolase complexed with sulphate, identification of a metal binding site IV

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, SO4, ZN

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2PTX \| pdb_00002ptx	Download File View File

Crystal Structure of the T. brucei enolase complexed with sulphate in closed conformation

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, SO4, ZN

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2PTY \| pdb_00002pty	Download File View File

Crystal Structure of the T. brucei enolase complexed with PEP

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, PEP, ZN

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2PTZ \| pdb_00002ptz	Download File View File

Crystal Structure of the T. brucei enolase complexed with phosphonoacetohydroxamate (PAH), His156-out conformation

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, PAH, ZN

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2PU0 \| pdb_00002pu0	Download File View File

Crystal Structure of the T. brucei enolase complexed with phosphonoacetohydroxamate (PAH), His156-in conformation

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, PAH, ZN

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2PU1 \| pdb_00002pu1	Download File View File

Crystal Structure of the T. brucei enolase complexed with Fluoro-phosphonoacetohydroxamate (FPAH)

Navarro, M.V.A.S., Rigden, D.J., Garratt, R.C., Dias, S.M.G.

(2007) FEBS J 274: 5077-5089

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma brucei
Macromolecule	Enolase (protein)
Unique Ligands	EDO, FSG, ZN

1 to 25 of 56 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BQ3 | pdb_00001bq3

1BQ4 | pdb_00001bq4

1EBB | pdb_00001ebb

1GMZ | pdb_00001gmz

1H2E | pdb_00001h2e

1H2F | pdb_00001h2f

1O98 | pdb_00001o98

1O99 | pdb_00001o99

1OEP | pdb_00001oep

1OJM | pdb_00001ojm

1OJN | pdb_00001ojn

1OJO | pdb_00001ojo

1OJP | pdb_00001ojp

1PKL | pdb_00001pkl

1W3Y | pdb_00001w3y

1XKM | pdb_00001xkm

2BRP | pdb_00002brp

2BRV | pdb_00002brv

2BRW | pdb_00002brw

2PTW | pdb_00002ptw

2PTX | pdb_00002ptx

2PTY | pdb_00002pty

2PTZ | pdb_00002ptz

2PU0 | pdb_00002pu0

2PU1 | pdb_00002pu1