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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Song, J."

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Search Summary

This query matches 376 Structures.

Refinements

Structure Determination Methodology

experimental (376)

Scientific Name of Source Organism

	Homo sapiens (177)
	synthetic construct (22)
	Arabidopsis thaliana (21)
	Mus musculus (20)
	Bos taurus (13)
	Escherichia phage T7 (10)
	Zika virus (10)
	Salmonella enterica subsp. enterica serovar Typhi str. CT18 (9)
	Vibrio cholerae (8)
	Escherichia phage T5 (7)

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Taxonomy

	Eukaryota (252)
	Bacteria (85)
	Riboviria (39)
	Duplodnaviria (33)
	other sequences (22)
	unclassified sequences (6)
	Eukaryota (eukaryotes) (5)

Experimental Method

	X-RAY DIFFRACTION (242)
	ELECTRON MICROSCOPY (81)
	SOLUTION NMR (53)

Polymer Entity Type

	Protein (376)
	DNA (42)
	RNA (13)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (60)
	2.0 - 2.5 (66)
	2.5 - 3.0 (76)
	3.0 - 3.5 (75)
	3.5 - 4.0 (21)
	4.0 - 4.5 (7)
	> 4.5 (4)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (10)
	2005 - 2009 (30)
	2010 - 2014 (46)
	2015 - 2019 (118)
	2020 - 2024 (163)
	2025 - 2029 (7)

Enzyme Classification Name

	Transferases (108)
	Hydrolases (34)
	Oxidoreductases (26)
	Isomerases (12)
	Lyases (8)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (34)
	MemProtMD (26)
	mpstruc (18)
	OPM (17)

Symmetry Type

	Asymmetric (248)
	Cyclic (119)
	Dihedral (12)
	Icosahedral (2)

SCOP Classification

	All beta proteins (61)
	Alpha and beta proteins (a+b) (38)
	All alpha proteins (23)
	Artifacts (21)
	Membrane and cell surface proteins and peptides (12)
	Alpha and beta proteins (a/b) (13)
	Small proteins (9)
	Multi-domain proteins (alpha and beta) (3)
	Peptides (2)

AllSelected

1 to 25 of 376 Structures

Page 1 of 16

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1BAH \| pdb_00001bah	Download File View File

A TWO DISULFIDE DERIVATIVE OF CHARYBDOTOXIN WITH DISULFIDE 13-33 REPLACED BY TWO ALPHA-AMINOBUTYRIC ACIDS, NMR, 30 STRUCTURES

Song, J., Gilquin, B., Jamin, N., Guenneugues, M., Dauplais, M., Vita, C., Menez, A.

(1997) Biochemistry 36: 3760-3766

Released	1997-01-11
Method	SOLUTION NMR
Organisms	Leiurus quinquestriatus
Macromolecule	CHARYBDOTOXIN (protein)

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1BGK \| pdb_00001bgk	Download File View File

SEA ANEMONE TOXIN (BGK) WITH HIGH AFFINITY FOR VOLTAGE DEPENDENT POTASSIUM CHANNEL, NMR, 15 STRUCTURES

Dauplais, M., Lecoq, A., Song, J., Cotton, J., Jamin, N., Gilquin, B., Roumestand, C., Vita, C., Harvey, A., Menez, A.

(1997) J Biological Chem 272: 4302-4309

Released	1997-01-27
Method	SOLUTION NMR
Organisms	Bunodosoma granuliferum
Macromolecule	BGK (protein)

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1G10 \| pdb_00001g10	Download File View File

TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE

Hemmi, H., Studts, J.M., Chae, Y.K., Song, J., Markley, J.L., Fox, B.G.

(2001) Biochemistry 40: 3512-3524

Released	2001-05-09
Method	SOLUTION NMR
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR (protein)

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1G11 \| pdb_00001g11	Download File View File

TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE

Hemmi, H., Studts, J.M., Chae, Y.K., Song, J., Markley, J.L., Fox, B.G.

(2001) Biochemistry 40: 3512-3524

Released	2001-05-09
Method	SOLUTION NMR
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR (protein)

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1M8B \| pdb_00001m8b	Download File View File

Solution structure of the C State of turkey ovomucoid at pH 2.5

Song, J., Laskowski Jr., M., Qasim, M.A., Markley, J.L.

(2003) Biochemistry 42: 6380-6391

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Meleagris gallopavo
Macromolecule	Ovomucoid (protein)

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1M8C \| pdb_00001m8c	Download File View File

SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5

Song, J., Laskowski Jr., M., Qasim, M.A., Markley, J.L.

(2003) Biochemistry 42: 6380-6391

Released	2002-09-04
Method	SOLUTION NMR
Organisms	Meleagris gallopavo
Macromolecule	Ovomucoid (protein)

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1PW4 \| pdb_00001pw4	Download File View File

Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

Huang, Y., Lemieux, M.J., Song, J., Auer, M., Wang, D.N.

(2003) Science 301: 616-620

Released	2003-08-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	Glycerol-3-phosphate transporter (protein)

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1T0G \| pdb_00001t0g	Download File View File

Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold

Song, J., Vinarov, D.A., Tyler, E.M., Shahan, M.N., Tyler, R.C., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2004) J Biomol NMR 30: 215-218

Released	2004-04-13
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	cytochrome b5 domain-containing protein (protein)

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1TIZ \| pdb_00001tiz	Download File View File

Solution Structure of a Calmodulin-Like Calcium-Binding Domain from Arabidopsis thaliana

Song, J., Zhao, Q., Thao, S., Frederick, R.O., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2004) J Biomol NMR 30: 451-456

Released	2004-08-10
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	calmodulin-related protein, putative (protein)

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1VJH \| pdb_00001vjh	Download File View File

Crystal structure of gene product of At1g24000 from Arabidopsis thaliana

Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

(2005) J Biomol NMR 32: 335-335

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana
Macromolecule	Bet v I allergen family (protein)

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1VJI \| pdb_00001vji	Download File View File

Gene Product of At1g76680 from Arabidopsis thaliana

Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

(2005) Proteins 61: 206-208

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.003 Å
Organisms	Arabidopsis thaliana
Macromolecule	12-oxophytodienoate reductase (OPR1) (protein)
Unique Ligands	FMN

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1XOY \| pdb_00001xoy	Download File View File

Solution structure of At3g04780.1, an Arabidopsis ortholog of the C-terminal domain of human thioredoxin-like protein

Song, J., Robert, C.T., Lee, M.S., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2005) Protein Sci 14: 1059-1063

Released	2004-10-12
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	hypothetical protein At3g04780.1 (protein)

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1Y4O \| pdb_00001y4o	Download File View File

Solution structure of a mouse cytoplasmic Roadblock/LC7 dynein light chain

Song, J., Tyler, R.C., Lee, M.S., Tyler, E.M., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

(2005) J Mol Biology 354: 1043-1051

Released	2005-01-18
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Dynein light chain 2A, cytoplasmic (protein)

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1YYC \| pdb_00001yyc	Download File View File

Solution Structure of a putative late embryogenesis abundant (LEA) protein At2g46140.1

Center for Eukaryotic Structural Genomics (CESG), Song, J., Tyler, R.C., Lee, M.S., Markley, J.L.

To be published

Released	2005-04-05
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	putative late embryogenesis abundant protein (protein)

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1Z3K \| pdb_00001z3k	Download File View File

Structural Insight into the Binding Diversity between the Tyr-Phosphorylated Human EphrinBs and Nck2 SH2 Domain

Ran, X., Song, J.

(2005) J Biological Chem 280: 19205-19212

Released	2005-03-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Cytoplasmic protein NCK2 (protein)

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2ANN \| pdb_00002ann	Download File View File

Crystal structure (I) of Nova-1 KH1/KH2 domain tandem with 25 nt RNA hairpin

Malinina, L., Teplova, M., Musunuru, K., Teplov, A., Darnell, J.C., Burley, S.K., Darnell, R.B., Patel, D.J.

(2011) Structure 19: 930-944

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	RNA-binding protein Nova-1 (protein) 5'-R(CPGPCPGPCPGPGPAPUPCPAPGPUPCPAPCPCPCPAPAPGPCPGPCP*G)-3' (nucleic acid)
Unique Ligands	K, MG

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2ANR \| pdb_00002anr	Download File View File

Crystal structure (II) of Nova-1 KH1/KH2 domain tandem with 25nt RNA hairpin

Malinina, L., Teplova, M., Musunuru, K., Teplov, A., Darnell, J.C., Burley, S.K., Darnell, R.B., Patel, D.J.

(2011) Structure 19: 930-944

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mus musculus
Macromolecule	RNA-binding protein Nova-1 (protein) 5'-R(CP(5BU)PCPGPCPGPGPAPUPCPAPGPUPCPAPCPCPCPAPAPGPCPGPAP*G)-3' (nucleic acid)
Unique Ligands	K, MG

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2ASQ \| pdb_00002asq	Download File View File

Solution Structure of SUMO-1 in Complex with a SUMO-binding Motif (SBM)

Song, J., Zhang, Z., Hu, W., Chen, Y.

(2005) J Biological Chem 280: 40122-40129

Released	2005-10-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein inhibitor of activated STAT2 (protein) Small ubiquitin-related modifier 1 (protein)

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2BF2 \| pdb_00002bf2	Download File View File

Crystal structure of native toluene-4-monooxygenase catalytic effector protein, T4moD

Lountos, G.T., Mitchell, K.H., Studts, J.M., Fox, B.G., Orville, A.M.

(2005) Biochemistry 44: 7131

Released	2005-05-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D (protein)

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2BF3 \| pdb_00002bf3	Download File View File

Crystal structure of a toluene 4-monooxygenase catalytic effector protein variant missing ten N-terminal residues (delta-N10 T4moD)

Lountos, G.T., Mitchell, K.H., Studts, J.M., Fox, B.G., Orville, A.M.

(2005) Biochemistry 44: 7131

Released	2005-05-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Ectopseudomonas mendocina
Macromolecule	TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D (protein)
Unique Ligands	HTO