RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Thompson, J.R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 98 Structures.

Refinements

Structure Determination Methodology

experimental (98)

Scientific Name of Source Organism

	Homo sapiens (79)
	Saccharomyces cerevisiae (5)
	Proteus mirabilis (4)
	Saccharomyces cerevisiae S288C (4)
	Escherichia coli (3)
	Ichthyomyzon unicuspis (1)
	Mus musculus (1)
	Schizosaccharomyces pombe (1)

Taxonomy

	Eukaryota (91)
	Bacteria (7)
	Eukaryota (eukaryotes) (4)

Experimental Method

	X-RAY DIFFRACTION (65)
	ELECTRON MICROSCOPY (30)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (98)
	DNA (21)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (26)
	2.0 - 2.5 (17)
	2.5 - 3.0 (13)
	3.0 - 3.5 (8)
	3.5 - 4.0 (20)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (3)
	2005 - 2009 (21)
	2010 - 2014 (19)
	2015 - 2019 (18)
	2020 - 2024 (35)

Enzyme Classification Name

	Transferases (36)
	Oxidoreductases (8)
	Translocases (6)
	Hydrolases (3)
	Ligases (2)

Membrane Protein Annotation

	OPM (7)
	PDBTM (6)
	mpstruc (6)
	MemProtMD (2)

Symmetry Type

	Asymmetric (65)
	Cyclic (31)
	Octahedral (2)
	Dihedral (1)

SCOP Classification

	All beta proteins (23)
	Alpha and beta proteins (a+b) (8)
	Alpha and beta proteins (a/b) (3)
	Artifacts (7)
	All alpha proteins (3)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (2)

AllSelected

1 to 25 of 98 Structures

Page 1 of 4

Sort by

Explore in 3D

1CBI \| pdb_00001cbi	Download File View File

APO-CELLULAR RETINOIC ACID BINDING PROTEIN I

Thompson, J.R., Bratt, J.M., Banaszak, L.J.

(1995) J Mol Biology 252: 433-446

Released	1995-11-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN I (protein)

Explore in 3D

1IB6 \| pdb_00001ib6	Download File View File

CRYSTAL STRUCTURE OF R153C E. COLI MALATE DEHYDROGENASE

Bell, J.K., Yennawar, H.P., Wright, S.K., Thompson, J.R., Viola, R.E., Banaszak, L.J.

(2001) J Biological Chem 276: 31156-31162

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	NAD, SO4

Explore in 3D

1IE3 \| pdb_00001ie3	Download File View File

CRYSTAL STRUCTURE OF R153C E. COLI MALATE DEHYDROGENASE

Bell, J.K., Yennawar, H.P., Wright, S.K., Thompson, J.R., Viola, R.E., Banaszak, L.J.

(2001) J Biological Chem 276: 31156-31162

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	MALATE DEHYDROGENASE (protein)
Unique Ligands	NAD, PYR

Explore in 3D

1LSH \| pdb_00001lsh	Download File View File

LIPID-PROTEIN INTERACTIONS IN LIPOVITELLIN

Thompson, J.R., Banaszak, L.J.

(2002) Biochemistry 41: 9398-9409

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Ichthyomyzon unicuspis
Macromolecule	LIPOVITELLIN (LV-1N, LV-1C) (protein) LIPOVITELLIN (LV-2) (protein)
Unique Ligands	PLD, UPL

Explore in 3D

1XCA \| pdb_00001xca	Download File View File

APO-CELLULAR RETINOIC ACID BINDING PROTEIN II

Chen, X., Ji, X.

(1998) J Mol Biology 278: 641-653

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CELLULAR RETINOIC ACID BINDING PROTEIN TYPE II (protein)

Explore in 3D

1YBA \| pdb_00001yba	Download File View File

The active form of phosphoglycerate dehydrogenase

Thompson, J.R., Banaszak, L.J.

(2005) Biochemistry 44: 5763-5773

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Escherichia coli
Macromolecule	D-3-phosphoglycerate dehydrogenase (protein)
Unique Ligands	AKG, NAD, PO4, UNL

Explore in 3D

2B02 \| pdb_00002b02	Download File View File

Crystal Structure of ARNT PAS-B Domain

Lee, J., Botuyan, M.V., Nomine, Y., Ohh, M., Thompson, J.R., Mer, G.

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Aryl hydrocarbon receptor nuclear translocator (protein)

Explore in 3D

2ETX \| pdb_00002etx	Download File View File

Crystal Structure of MDC1 Tandem BRCT Domains

Wasielewski, E., Kim, Y., Joachimiak, A., Thompson, J.R., Mer, G.

(2012) J Biological Chem 287: 2854-2862

Released	2005-11-15
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Homo sapiens
Macromolecule	Mediator of DNA damage checkpoint protein 1 (protein)

Explore in 3D

2FHD \| pdb_00002fhd	Download File View File

Crystal structure of Crb2 tandem tudor domains

Lee, J., Botuyan, M.V., Thompson, J.R., Mer, G.

(2006) Cell 127: 1361-1373

Released	2007-01-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	DNA repair protein rhp9/CRB2 (protein)
Unique Ligands	PO4

Explore in 3D

2G3R \| pdb_00002g3r	Download File View File

Crystal Structure of 53BP1 tandem tudor domains at 1.2 A resolution

Lee, J., Botuyan, M.V., Thompson, J.R., Mer, G.

(2006) Cell 127: 1361-1373

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Tumor suppressor p53-binding protein 1 (protein)
Unique Ligands	SO4

Explore in 3D

2GGM \| pdb_00002ggm	Download File View File

Human centrin 2 xeroderma pigmentosum group C protein complex

Thompson, J.R.

(2006) J Biological Chem 281: 18746-18752

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Centrin-2 (protein) DNA-repair protein complementing XP-C cells (protein)
Unique Ligands	CA

Explore in 3D

2IG0 \| pdb_00002ig0	Download File View File

Structure of 53BP1/methylated histone peptide complex

Mer, G.

(2006) Cell 127: 1361-1373

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Dimethylated Histone H4-K20 peptide (protein) Tumor suppressor p53-binding protein 1 (protein)
Unique Ligands	SO4

Explore in 3D

2KRE \| pdb_00002kre	Download File View File

Solution structure of E4B/UFD2A U-Box domain

Nomine, Y., Wasielewski, E., Botuyan, M., Mer, G.

(2010) Structure 18: 955-965

Released	2009-12-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin conjugation factor E4 B (protein)

Explore in 3D

2LDM \| pdb_00002ldm	Download File View File

Solution structure of human PHF20 Tudor2 domain bound to a p53 segment containing a dimethyllysine analog p53K370me2

Cui, G., Botuyan, M., Mer, G.

(2012) Nat Struct Mol Biol 19: 916-924

Released	2012-05-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

2LH0 \| pdb_00002lh0	Download File View File

NMR structure of the histone-interacting N-terminal homodimeric region of Rtt106

Hu, Q., Cui, G., Mer, G.

(2012) Nature 483: 104-107

Released	2012-02-01
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Histone chaperone RTT106 (protein)

Explore in 3D

2OBH \| pdb_00002obh	Download File View File

Centrin-XPC peptide

Charbonnier, J.B.

(2007) J Mol Biology 373: 1032-1046

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Centrin-2 (protein) DNA-repair protein complementing XP-C cells (protein)
Unique Ligands	CA

Explore in 3D

2Q1E \| pdb_00002q1e	Download File View File

Altered dimer interface decreases stability in an amyloidogenic kappa1 Bence Jones protein.

Thompson, J.R., Ramirez-Alvarado, M., Baden, E.M.

(2008) J Biological Chem 283: 15853-15860

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Amyloidogenic immunoglobulin light chain protein AL-09 (protein)
Unique Ligands	SO4

Explore in 3D

2Q20 \| pdb_00002q20	Download File View File

Structure of the germline Vk1 O18/O8 light chain variable domain homodimer

Thompson, J.R., Ramirez-Alvarado, M., Baden, E.M.

(2008) J Biological Chem 283: 15853-15860

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Vk1 O18/O8 germline light chain variable domain (protein)

Explore in 3D

2QQR \| pdb_00002qqr	Download File View File

JMJD2A hybrid tudor domains

Lee, J., Botuyan, M.V., Mer, G.

(2008) Nat Struct Mol Biol 15: 109-111

Released	2007-12-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein)
Unique Ligands	SO4

Explore in 3D

2QQS \| pdb_00002qqs	Download File View File

JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide

Lee, J., Botuyan, M.V., Mer, G.

(2008) Nat Struct Mol Biol 15: 109-111

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein) METHYLATED HISTONE H4 PEPTIDE (protein)