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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wolf, M."

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Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (37)
	Homo sapiens (14)
	Trypanosoma brucei brucei (7)
	Escherichia phage DT57C (6)
	synthetic construct (6)
	Vaccinia virus WR (5)
	Human immunodeficiency virus 1 (2)
	Methanocaldococcus jannaschii DSM 2661 (2)
	Methanothermus fervidus DSM 2088 (2)
	Porphyromonas gingivalis ATCC 33277 (2)

More...

Taxonomy

	Riboviria (40)
	Eukaryota (23)
	Archaea (7)
	Bacteria (6)
	Duplodnaviria (6)
	other sequences (6)
	Varidnaviria (5)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (57)
	ELECTRON MICROSCOPY (27)

Polymer Entity Type

	Protein (84)
	RNA (3)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (37)
	2.0 - 2.5 (9)
	2.5 - 3.0 (8)
	3.0 - 3.5 (5)
	3.5 - 4.0 (9)
	4.0 - 4.5 (3)
	> 4.5 (4)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (16)
	2020 - 2024 (62)

Enzyme Classification Name

	Hydrolases (47)
	Oxidoreductases (3)
	Ligases (2)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)

Symmetry Type

	Cyclic (53)
	Asymmetric (15)
	Dihedral (10)
	Helical (4)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	All beta proteins (30)
	Alpha and beta proteins (a+b) (5)

AllSelected

1 to 25 of 84 Structures

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2YHI \| pdb_00002yhi	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor WH16

Nerini, E., Dawson, A., Hunter, W.N., Costi, M.P.

(2017) ACS Omega 2: 5666-5683

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma brucei
Macromolecule	PTERIDINE REDUCTASE, PUTATIVE (protein)
Unique Ligands	ACT, DTT, DTU, DTV, NAP, W16

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2YHU \| pdb_00002yhu	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor WHF30

Nerini, E., Dawson, A., Hunter, W.N., Costi, M.P.

(2017) ACS Omega 2: 5666-5683

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Trypanosoma brucei
Macromolecule	PTERIDINE REDUCTASE (protein)
Unique Ligands	ACT, NDP, WHF

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3IYJ \| pdb_00003iyj	Download File View File

Bovine papillomavirus type 1 outer capsid

Wolf, M., Garcea, R.L., Grigorieff, N., Harrison, S.C.

(2010) Proc Natl Acad Sci U S A 107: 6298-6303

Released	2010-01-26
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Deltapapillomavirus 4
Macromolecule	Major capsid protein L1 (protein)

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4EEH \| pdb_00004eeh	Download File View File

Hsp90 Alpha N-terminal Domain in Complex with an Inhibitor 3-(4-Hydroxy-phenyl)-1H-indazol-6-ol

Musil, D., Lehmann, M., Graedler, U., Buchstaller, H.-P.

(2012) Bioorg Med Chem Lett 22: 4396-4403

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	HH6, SO4

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4EFT \| pdb_00004eft	Download File View File

Hsp90 Alpha N-terminal Domain in Complex with an Inhibitor 3-Cyclohexyl-2-(6-hydroxy-1H-indazol-3-yl)-propionitrile

Musil, D., Lehmann, M., Graedler, U., Buchstaller, H.-P.

(2012) Bioorg Med Chem Lett 22: 4396-4403

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	EFT

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4EFU \| pdb_00004efu	Download File View File

Hsp90 Alpha N-terminal Domain in Complex with an Inhibitor 6-Hydroxy-3-(3-methyl-benzyl)-1H-indazole-5-carboxylic acid benzyl-methyl-amide

Musil, D., Lehmann, M., Graedler, U., Buchstaller, H.-P.

(2012) Bioorg Med Chem Lett 22: 4396-4403

Released	2012-06-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	EFU, SO4

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4WCD \| pdb_00004wcd	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor 10

Mangani, S., Di Pisa, F., Pozzi, C.

(2017) ACS Omega 2: 5666-5683

Released	2015-09-30
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	3KH, ACT, GOL, NAP

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4WCF \| pdb_00004wcf	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor 9

Mangani, S., Di Pisa, F., Pozzi, C.

(2017) ACS Omega 2: 5666-5683

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	3KN, ACT, GOL, NAP

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4WIA \| pdb_00004wia	Download File View File

Crystal structure of flagellar accessory protein FlaH from Methanocaldococcus jannaschii

Meshcheryakov, V.A., Wolf, M.

(2016) Protein Sci 25: 1147-1155

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Putative flagella-related protein H (protein)
Unique Ligands	GOL, SO4

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5IZC \| pdb_00005izc	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor F032

Pozzi, C., Landi, G., Di Pisa, F., Mangani, S.

(2017) ACS Omega 2: 5666-5683

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	6F4, ACT, GOL, NAP

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5JCJ \| pdb_00005jcj	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor NMT-H037 (compound 7)

Landi, G., Pozzi, C., Di Pisa, F., Dello Iacono, L., Mangani, S.

(2016) J Med Chem 59: 7598-7616

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	6JM, ACT, NAP

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5JCX \| pdb_00005jcx	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor NP-29

Landi, G., Pozzi, C., Di Pisa, F., Dello Iacono, L., Mangani, S.

(2016) J Med Chem 59: 7598-7616

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	ACT, CC6, GOL, NAP

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5JDC \| pdb_00005jdc	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor NP-13 (Hesperetin)

Mangani, S., Pozzi, C., Di Pisa, F., Landi, G., Dello Iacono, L.

(2016) J Med Chem 59: 7598-7616

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	6JP, ACT, GOL, NAP

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5JDI \| pdb_00005jdi	Download File View File

Trypanosoma brucei PTR1 in complex with cofactor and inhibitor NMT-H024 (compound 2)

Landi, G., Pozzi, C., Di Pisa, F., Dello lacono, L., Mangani, S.

(2016) J Med Chem 59: 7598-7616

Released	2016-08-17
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Pteridine reductase (protein)
Unique Ligands	6JO, ACT, NAP

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5JXL \| pdb_00005jxl	Download File View File

Cryo-EM structure of the flagellar hook of Campylobacter jejuni

Matsunami, H., Wolf, M., Samatey, F.A.

(2016) Nat Commun 7: 13425-13425

Released	2016-11-16
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Campylobacter jejuni subsp. jejuni 81116
Macromolecule	flagellar hook protein FlgE (protein)

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5YA6 \| pdb_00005ya6	Download File View File

Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii

Meshcheryakov, V.A., Wolf, M.

(2019) EMBO Rep 20:

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Flagellin B1 (protein)
Unique Ligands	CA

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5Z1L \| pdb_00005z1l	Download File View File

Cryo-EM structure of Methanoccus maripaludis archaellum

Meshcheryakov, V.A., Shibata, S., Schreiber, M.T., Villar-Briones, A., Jarrell, K.F., Aizawa, S., Wolf, M.

(2019) EMBO Rep 20:

Released	2019-02-13
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Methanococcus maripaludis S2
Macromolecule	Flagellin (protein)

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5Z9W \| pdb_00005z9w	Download File View File

Ebola virus nucleoprotein-RNA complex

Sugita, Y., Matsunami, H., Kawaoka, Y., Noda, T., Wolf, M.

(2018) Nature 563: 137-140

Released	2018-10-24
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Ebolavirus nucleoprotein (residues 19-406) (protein) RNA (6-MER) (nucleic acid)

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6CX1 \| pdb_00006cx1	Download File View File

Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex

Jayawardena, N., Burga, L., Easingwood, R., Takizawa, Y., Wolf, M., Bostina, M.

(2018) Proc Natl Acad Sci U S A 115: E10934-E10940

Released	2018-10-31
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Senecavirus A
Macromolecule	Anthrax toxin receptor 1 (protein) Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)

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6JZJ \| pdb_00006jzj	Download File View File

Structure of FimA type-2 (FimA2) prepilin of the type V major fimbrium

Okada, K., Shoji, M., Nakayam, K., Imada, K.

(2020) Nat Microbiol 5: 830-837

Released	2020-04-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Porphyromonas gingivalis TDC60
Macromolecule	Major fimbrium subunit FimA type-2 (protein)
Unique Ligands	SO4

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6JZK \| pdb_00006jzk	Download File View File

Structure of FimA type-1 (FimA1) prepilin of the type V major fimbrium

Okada, K., Shoji, M., Nakayam, K., Imada, K.

(2020) Nat Microbiol 5: 830-837

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Porphyromonas gingivalis ATCC 33277
Macromolecule	Major fimbrium subunit FimA type-1 (protein)
Unique Ligands	GOL, SO4, SRT

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6K3I \| pdb_00006k3i	Download File View File

Salmonella hook in curved state - 66 subunit models

Shibata, S., Matsunami, H., Wolf, M., Aizawa, S.

(2019) Nat Struct Mol Biol 26: 941-945

Released	2019-10-02
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Flagellar hook protein FlgE (protein)

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6KMF \| pdb_00006kmf	Download File View File

FimA type V pilus from P.gingivalis

Shibata, S., Shoji, M., Matsunami, H., Matthews, M., Imada, K., Nakayama, K., Wolf, M.

(2020) Nat Microbiol 5: 830-837

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Porphyromonas gingivalis ATCC 33277
Macromolecule	Major fimbrium subunit FimA type-1 (protein)

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6L49 \| pdb_00006l49	Download File View File

H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA

Takizawa, Y., Ho, C.-H., Tachiwana, H., Matsunami, H., Ohi, M., Wolf, M., Kurumizaka, H.

(2020) Structure 28: 44

Released	2019-12-04
Method	ELECTRON MICROSCOPY 18.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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6L4A \| pdb_00006l4a	Download File View File

H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA

Takizawa, Y., Ho, C.-H., Tachiwana, H., Matsunami, H., Ohi, M., Wolf, M., Kurumizaka, H.

(2020) Structure 28: 44

Released	2019-12-04
Method	ELECTRON MICROSCOPY 12.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

1 to 25 of 84 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2YHI | pdb_00002yhi

2YHU | pdb_00002yhu

3IYJ | pdb_00003iyj

4EEH | pdb_00004eeh

4EFT | pdb_00004eft

4EFU | pdb_00004efu

4WCD | pdb_00004wcd

4WCF | pdb_00004wcf

4WIA | pdb_00004wia

5IZC | pdb_00005izc

5JCJ | pdb_00005jcj

5JCX | pdb_00005jcx

5JDC | pdb_00005jdc

5JDI | pdb_00005jdi

5JXL | pdb_00005jxl

5YA6 | pdb_00005ya6

5Z1L | pdb_00005z1l

5Z9W | pdb_00005z9w

6CX1 | pdb_00006cx1

6JZJ | pdb_00006jzj

6JZK | pdb_00006jzk

6K3I | pdb_00006k3i

6KMF | pdb_00006kmf

6L49 | pdb_00006l49

6L4A | pdb_00006l4a