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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xing, J."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (5)
	Zea mays (3)
	Mus musculus (2)
	Asticcacaulis benevestitus (1)
	Chlamydomonas reinhardtii (1)
	Oscillibacter ruminantium (1)
	Thalassiosira pseudonana CCMP1335 (1)

Taxonomy

	Eukaryota (12)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (7)
	2025 - 2029 (2)

Enzyme Classification Name

	Isomerases (3)
	Oxidoreductases (1)
	Hydrolases (1)
	Transferases (1)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	All alpha proteins (5)
	Artifacts (5)

AllSelected

1 to 14 of 14 Structures

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5Y1Y \| pdb_00005y1y	Download File View File

Complex structure of nitroxoline with the first bromodomain of BRD4

Jiang, H., Luo, C.

(2017) Org Biomol Chem 15: 9352-9361

Released	2017-11-15
Method	X-RAY DIFFRACTION 1.912 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	HNQ

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5Z5T \| pdb_00005z5t	Download File View File

The first bromodomain of BRD4 with compound BDF-2141

Zhang, H., Luo, C.

(2018) Oncogenesis 7: 83-83

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	96R

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5Z5U \| pdb_00005z5u	Download File View File

The first bromodomain of BRD4 with compound BDF-2254

Zhang, H., Luo, C.

(2018) Oncogenesis 7: 83-83

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.631 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	96U

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5Z5V \| pdb_00005z5v	Download File View File

The first bromodomain of BRD4 with compound BDF-1253

Zhang, H., Luo, C.

(2018) Oncogenesis 7: 83-83

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	96X

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6AFR \| pdb_00006afr	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with 5-((4-fluoro-1H-imidazol-1-yl)methyl)quinolin-8-ol

Xing, J., Zhang, R.K., Zheng, M.Y., Luo, C., Jiang, X.R.

(2018) Eur J Med Chem 163: 281-294

Released	2018-12-12
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	9E3

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7UG2 \| pdb_00007ug2	Download File View File

Crystal structure of the coiled-coil domain of TRIM75

Lou, X.H., Ma, B.B., Zhuang, Y., Li, X.C.

(2022) Comput Struct Biotechnol J 20: 4921-4929

Released	2023-02-15
Method	X-RAY DIFFRACTION 2.052 Å
Organisms	Mus musculus
Macromolecule	Tripartite motif-containing protein 75 (protein)
Unique Ligands	ACE, IPA

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7XPO \| pdb_00007xpo	Download File View File

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD/UDP-Glc

Chen, Y.H., Wang, X.C., Zhang, C.R.

(2023) Nat Commun 14: 4384-4384

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Zea mays
Macromolecule	UDP-glucose 4-epimerase (protein)
Unique Ligands	GOL, NAD, UPG

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7XPP \| pdb_00007xpp	Download File View File

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD

Chen, Y.H., Wang, X.C., Zhang, C.R.

(2023) Nat Commun 14: 4384-4384

Released	2023-05-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Zea mays
Macromolecule	UDP-glucose 4-epimerase (protein)
Unique Ligands	NAD

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7XPQ \| pdb_00007xpq	Download File View File

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD/UDP-GlcNAc

Chen, Y.H., Wang, X.C., Zhang, C.R.

(2023) Nat Commun 14: 4384-4384

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Zea mays
Macromolecule	UDP-glucose 4-epimerase (protein)
Unique Ligands	NAD, UD1

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8FXF \| pdb_00008fxf	Download File View File

Crystal structure of the coiled-coil domain of TRIM56

Lou, X.H., Ma, B.B., Zhuang, Y., Li, X.C.

(2023) Comput Struct Biotechnol J 21: 2801-2808

Released	2023-05-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase TRIM56 (protein)
Unique Ligands	EPE

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8PY0 \| pdb_00008py0	Download File View File

Sensor domain of Oscillibacter ruminantium chemoreceptor in complex with formate.

Gavira, J.A., Krell, T., Monteagudo-Cascales, E., Velando, F., Matilla, M.A., Martinez-Rodriguez, S.

(2025) Proc Natl Acad Sci U S A 122: e2409881122-e2409881122

Released	2025-02-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Oscillibacter ruminantium
Macromolecule	Ligand Binding domain (LBD) Chemoreceptor (protein)
Unique Ligands	FMT, NA

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8PY1 \| pdb_00008py1	Download File View File

Sensor domain of Asticcacaulis benevestitus chemoreceptor in complex with formate.

Gavira, J.A., Krell, T., Monteagudo-Cascales, E., Velando, F., Matilla, M.A., Martinez-Rodriguez, S.

(2025) Proc Natl Acad Sci U S A 122: e2409881122-e2409881122

Released	2025-02-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Asticcacaulis benevestitus
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	FMT, SO4

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8XKS \| pdb_00008xks	Download File View File

The cryo-EM structure of Orf2971-FtsHi motor complex

Wang, N., Li, M.

(2024) Mol Plant 17: 1702-1718

Released	2024-12-04
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Unique protein chains: 19
Unique Ligands	ACD, DGA, DGD, LMG, SQD, ZN

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8XLS \| pdb_00008xls	Download File View File

PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335

Kato, K., Nakajima, Y., Shen, J.R., Nagao, R.

(2024) Elife 13:

Released	2024-10-30
Method	ELECTRON MICROSCOPY 2.3 Å
Organisms	Thalassiosira pseudonana CCMP1335
Macromolecule	Unique protein chains: 17
Unique Ligands	5X6, A86, BCR, CL0, CLA, DD6, DGD, KC1, LHG, LMG, LMT, PQN, SF4, UNL

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5Y1Y | pdb_00005y1y

Complex structure of nitroxoline with the first bromodomain of BRD4

5Z5T | pdb_00005z5t

The first bromodomain of BRD4 with compound BDF-2141

5Z5U | pdb_00005z5u

The first bromodomain of BRD4 with compound BDF-2254

5Z5V | pdb_00005z5v

The first bromodomain of BRD4 with compound BDF-1253

6AFR | pdb_00006afr

Crystal Structure of the first bromodomain of human BRD4 in complex with 5-((4-fluoro-1H-imidazol-1-yl)methyl)quinolin-8-ol

7UG2 | pdb_00007ug2

Crystal structure of the coiled-coil domain of TRIM75

7XPO | pdb_00007xpo

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD/UDP-Glc

7XPP | pdb_00007xpp

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD

7XPQ | pdb_00007xpq

Crystal Structure of UDP-Glc/GlcNAc 4-Epimerase with NAD/UDP-GlcNAc

8FXF | pdb_00008fxf

Crystal structure of the coiled-coil domain of TRIM56

8PY0 | pdb_00008py0

Sensor domain of Oscillibacter ruminantium chemoreceptor in complex with formate.

8PY1 | pdb_00008py1

Sensor domain of Asticcacaulis benevestitus chemoreceptor in complex with formate.

8XKS | pdb_00008xks

The cryo-EM structure of Orf2971-FtsHi motor complex

8XLS | pdb_00008xls

PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5Y1Y | pdb_00005y1y

5Z5T | pdb_00005z5t

5Z5U | pdb_00005z5u

5Z5V | pdb_00005z5v

6AFR | pdb_00006afr

7UG2 | pdb_00007ug2

7XPO | pdb_00007xpo

7XPP | pdb_00007xpp

7XPQ | pdb_00007xpq

8FXF | pdb_00008fxf

8PY0 | pdb_00008py0

8PY1 | pdb_00008py1

8XKS | pdb_00008xks

8XLS | pdb_00008xls