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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yan, C."

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Search Summary

This query matches 288 Structures.

Refinements

Structure Determination Methodology

experimental (288)

Scientific Name of Source Organism

	Homo sapiens (145)
	Saccharomyces cerevisiae S288C (39)
	Arabidopsis thaliana (20)
	Saccharomyces cerevisiae (16)
	synthetic construct (9)
	Xenopus laevis (8)
	Bacillus subtilis (6)
	Canis lupus familiaris (6)
	unidentified adenovirus (6)
	Escherichia coli K-12 (5)

More...

Taxonomy

	Eukaryota (252)
	Bacteria (32)
	other sequences (9)
	Varidnaviria (7)
	Archaea (3)
	unclassified sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (156)
	X-RAY DIFFRACTION (129)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (288)
	RNA (47)
	DNA (26)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (37)
	2.0 - 2.5 (54)
	2.5 - 3.0 (53)
	3.0 - 3.5 (65)
	3.5 - 4.0 (39)
	4.0 - 4.5 (16)
	> 4.5 (19)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (2)
	2005 - 2009 (20)
	2010 - 2014 (54)
	2015 - 2019 (78)
	2020 - 2024 (125)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (88)
	Transferases (79)
	Isomerases (24)
	Ligases (12)
	Oxidoreductases (8)
	Translocases (3)

Membrane Protein Annotation

	PDBTM (92)
	MemProtMD (63)
	mpstruc (61)
	OPM (37)

Symmetry Type

	Asymmetric (231)
	Cyclic (58)
	Dihedral (6)
	Icosahedral (1)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a+b) (48)
	All alpha proteins (8)
	Alpha and beta proteins (a/b) (11)
	Artifacts (15)
	Small proteins (6)
	Coiled coil proteins (4)
	Peptides (3)
	Membrane and cell surface proteins and peptides (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 288 Structures

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1B5A \| pdb_00001b5a	Download File View File

RAT FERROCYTOCHROME B5 A CONFORMATION, NMR, 1 STRUCTURE

Dangi, B., Sarma, S., Yan, C., Banville, D., Guiles, R.D.

(1998) Biochemistry 37: 8289-8302

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	FERROCYTOCHROME B5 (protein)
Unique Ligands	HEM

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1B5B \| pdb_00001b5b	Download File View File

RAT FERROCYTOCHROME B5 B CONFORMATION, NMR, 1 STRUCTURE

Dangi, B., Sarma, S., Yan, C., Banville, D., Guiles, R.D.

(1998) Biochemistry 37: 8289-8302

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	FERROCYTOCHROME B5 (protein)
Unique Ligands	HEM

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1S9I \| pdb_00001s9i	Download File View File

X-ray structure of the human mitogen-activated protein kinase kinase 2 (MEK2)in a complex with ligand and MgATP

Ohren, J.F., Chen, H., Pavlovsky, A., Whitehead, C., Yan, C., McConnell, P., Delaney, A., Dudley, D.T., Sebolt-Leopold, J., Hasemann, C.A.

(2004) Nat Struct Mol Biol 11: 1192-1197

Released	2004-11-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 2 (protein)
Unique Ligands	5EA, ATP, MG

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1S9J \| pdb_00001s9j	Download File View File

X-ray structure of the human mitogen-activated protein kinase kinase 1 (MEK1) in a complex with ligand and MgATP

Ohren, J.F., Chen, H., Pavlovsky, A., Whitehead, C., Yan, C., McConnell, P., Delaney, A., Dudley, D.T., Sebolt-Leopold, J., Hasemann, C.A.

(2004) Nat Struct Mol Biol 11: 1192-1197

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	ATP, BBM, MG

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2C00 \| pdb_00002c00	Download File View File

Crystal Structure of Biotin Carboxylase from Pseudomonas aeruginosa in apo form

Mochalkin, I.

(2008) Protein Sci 17: 1706

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BIOTIN CARBOXYLASE (protein)
Unique Ligands	SO4

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2J9G \| pdb_00002j9g	Download File View File

Crystal structure of Biotin carboxylase from E. coli in complex with AMPPNP and ADP

Mochalkin, I.

(2008) Protein Sci 17: 1706

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	BIOTIN CARBOXYLASE (protein)
Unique Ligands	ADP, ANP, MG, SO4

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2OW9 \| pdb_00002ow9	Download File View File

Crystal structure analysis of the MMP13 catalytic domain in complex with specific inhibitor

Pavlovsky, A.G.

(2007) J Biological Chem 282: 27781-27791

Released	2007-02-27
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	CA, HAE, SO4, SP6, ZN

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2OZR \| pdb_00002ozr	Download File View File

MMP13 Catalytic Domain Complexed with 4-{[1-methyl-2,4-dioxo-6-(3-phenylprop-1-yn-1-yl)-1,4-dihydroquinazolin-3(2H)-yl]methyl}benzoic acid

Johnson, A.R., Pavlovsky, A.G., Ortwine, D.F., Prior, F., Man, C.-F., Bornemeier, D.A., Banotai, C.A., Mueller, W.T., McConnell, P., Yan, C.H., Baragi, V., Lesch, C., Roark, W.H., Lie, J.J., Fasquelle, V., Wilson, M., Robertson, D., Datta, K., Guzman, R., Han, H.-K., Dyer, R.D.

(2007) J Biological Chem 282: 27781-27791

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Collagenase 3 (protein)
Unique Ligands	CA, GG1, HAE, ZN

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2RHQ \| pdb_00002rhq	Download File View File

PheRS from Staphylococcus haemolyticus- rational protein engineering and inhibitor studies

Evdokimov, A.G., Mekel, M.

(2008) J Struct Biol 162: 152-169

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus haemolyticus
Macromolecule	Phenylalanyl-tRNA synthetase alpha chain (protein) Phenylalanyl-tRNA synthetase beta chain (protein)
Unique Ligands	GAX, ZN

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2RHS \| pdb_00002rhs	Download File View File

PheRS from Staphylococcus haemolyticus- rational protein engineering and inhibitor studies

Evdokimov, A.G., Mekel, M.

(2008) J Struct Biol 162: 152-169

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus haemolyticus
Macromolecule	Phenylalanyl-tRNA synthetase alpha chain (protein) Phenylalanyl-tRNA synthetase beta chain (protein)
Unique Ligands	GAX, SO4, ZN

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2VPQ \| pdb_00002vpq	Download File View File

Crystal structure of biotin carboxylase from S. aureus complexed with AMPPNP

Mochalkin, I.

(2008) Protein Sci 17: 1706

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus
Macromolecule	ACETYL-COA CARBOXYLASE (protein)
Unique Ligands	ANP, CL, MG

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2VQD \| pdb_00002vqd	Download File View File

Crystal Structure of Biotin Carboxylase from Pseudomonas aeruginosa complexed with AMPCP

Mochalkin, I.

(2008) Protein Sci 17: 1706

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BIOTIN CARBOXYLASE (protein)
Unique Ligands	AP2, MG, SO4

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2VR1 \| pdb_00002vr1	Download File View File

Crystal structure of Biotin carboxylase from E. coli in complex with ATP analog, ADPCF2P.

Mochalkin, I., Waldrop, G.L.

(2008) Protein Sci 17: 1706

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	BIOTIN CARBOXYLASE (protein)
Unique Ligands	ATF, CL

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2Y1Q \| pdb_00002y1q	Download File View File

Crystal Structure of ClpC N-terminal Domain

Wang, F., Mei, Z.Q., Wang, J.W., Shi, Y.G.

(2011) Nature 471: 331

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis
Macromolecule	NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB (protein)
Unique Ligands	SO4

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2Y1R \| pdb_00002y1r	Download File View File

Structure of MecA121 & ClpC N-domain complex

Wang, F., Mei, Z.Q., Wang, J.W., Shi, Y.G.

(2011) Nature 471: 331

Released	2011-03-16
Method	X-RAY DIFFRACTION 2.595 Å
Organisms	Bacillus subtilis
Macromolecule	ADAPTER PROTEIN MECA 1 (protein) NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB (protein)
Unique Ligands	SRT

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3DNG \| pdb_00003dng	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXA, CA, ZN

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3DPE \| pdb_00003dpe	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, ZN

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3DPF \| pdb_00003dpf	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, HAE, ZN

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3DY7 \| pdb_00003dy7	Download File View File

X-ray structure of the human mitogen-activated protein kinase kinase 1 (MEK1) in a complex with ligand and MgATP

Ohren, J.F., Pavlovsky, A., Zhang, E.

(2009) Bioorg Med Chem Lett 19: 226-229

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	1CX, ATP, MG

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3EQB \| pdb_00003eqb	Download File View File

X-ray structure of the human mitogen-activated protein kinase kinase 1 (MEK1) in a complex with ligand and MgATP

Ohren, J.F., Pavlovsky, A., Zhang, E.

(2008) Bioorg Med Chem Lett 18: 6171-6174

Released	2008-11-11
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity mitogen-activated protein kinase kinase 1 (protein)
Unique Ligands	ATP, LUG, MG

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3J8H \| pdb_00003j8h	Download File View File

Structure of the rabbit ryanodine receptor RyR1 in complex with FKBP12 at 3.8 Angstrom resolution

Yan, Z., Bai, X., Yan, C., Wu, J., Scheres, S.H.W., Shi, Y., Yan, N.

(2015) Nature 517: 50-55

Released	2014-12-10
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Peptidyl-prolyl cis-trans isomerase FKBP1A (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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3J9K \| pdb_00003j9k	Download File View File

Structure of Dark apoptosome in complex with Dronc CARD domain

Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.

(2015) Genes Dev 29: 277-287

Released	2015-02-25
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Apaf-1 related killer DARK (protein) Caspase Nc (protein)
Unique Ligands	ADP

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3J9L \| pdb_00003j9l	Download File View File

Structure of Dark apoptosome from Drosophila melanogaster

Pang, Y., Bai, X., Yan, C., Hao, Q., Chen, Z., Wang, J., Scheres, S.H.W., Shi, Y.

(2015) Genes Dev 29: 277-287

Released	2015-02-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Drosophila melanogaster
Macromolecule	Apaf-1 related killer DARK (protein)
Unique Ligands	DTP

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3JB9 \| pdb_00003jb9	Download File View File

Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution

Yan, C., Hang, J., Wan, R., Huang, M., Wong, C., Shi, Y.

(2015) Science 349: 1182-1191

Released	2015-09-23
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Schizosaccharomyces pombe Schizosaccharomyces pombe 972h-
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 5
Unique Ligands	ADP, GDP, MG, ZN

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3JBT \| pdb_00003jbt	Download File View File

Atomic structure of the Apaf-1 apoptosome

Zhou, M., Li, Y., Hu, Q., Bai, X., Huang, W., Yan, C., Scheres, S.H.W., Shi, Y.

(2015) Genes Dev 29: 2349-2361

Released	2015-11-18
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Equus caballus Homo sapiens
Macromolecule	Apoptotic protease-activating factor 1 (protein) Cytochrome c (protein)
Unique Ligands	DTP, HEM, MG

1 to 25 of 288 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B5A | pdb_00001b5a

1B5B | pdb_00001b5b

1S9I | pdb_00001s9i

1S9J | pdb_00001s9j

2C00 | pdb_00002c00

2J9G | pdb_00002j9g

2OW9 | pdb_00002ow9

2OZR | pdb_00002ozr

2RHQ | pdb_00002rhq

2RHS | pdb_00002rhs

2VPQ | pdb_00002vpq

2VQD | pdb_00002vqd

2VR1 | pdb_00002vr1

2Y1Q | pdb_00002y1q

2Y1R | pdb_00002y1r

3DNG | pdb_00003dng

3DPE | pdb_00003dpe

3DPF | pdb_00003dpf

3DY7 | pdb_00003dy7

3EQB | pdb_00003eqb

3J8H | pdb_00003j8h

3J9K | pdb_00003j9k

3J9L | pdb_00003j9l

3JB9 | pdb_00003jb9

3JBT | pdb_00003jbt