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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD Name HAS EXACT PHRASE "=4beta-beta-xylotriose"

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Search Summary

This query matches 55 Structures.

Refinements

Structure Determination Methodology

experimental (55)

Scientific Name of Source Organism

	Trichoderma reesei RUT C-30 (12)
	Penicillium simplicissimum (4)
	Streptomyces olivaceoviridis (4)
	uncultured bacterium (4)
	Acetivibrio thermocellus (3)
	Bacillus subtilis (3)
	Geobacillus stearothermophilus (2)
	Panus similis (2)
	Thermoclostridium stercorarium (2)
	Trichoderma reesei (2)

More...

Taxonomy

	Bacteria (31)
	Eukaryota (24)

Experimental Method

X-RAY DIFFRACTION (55)

Polymer Entity Type

Protein (55)

Refinement Resolution (Å)

	1.0 - 1.5 (15)
	1.5 - 2.0 (26)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (7)
	2005 - 2009 (5)
	2010 - 2014 (12)
	2015 - 2019 (15)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (45)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (48)
	Cyclic (8)
	Dihedral (1)

SCOP Classification

	All beta proteins (24)
	Alpha and beta proteins (a/b) (14)
	Artifacts (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 55 Structures

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1B30 \| pdb_00001b30	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH 1,2-(4-DEOXY-BETA-L-THREO-HEX-4-ENOPYRANOSYLURONIC ACID)-BETA-1,4-XYLOTRIOSE)

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-03-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique branched monosaccharides	XYP

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1B3X \| pdb_00001b3x	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOTRIOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1B3Y \| pdb_00001b3y	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOTETRAOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYS
Unique branched monosaccharides	XYP

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1B3Z \| pdb_00001b3z	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOPENTAOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP, XYS

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1ISX \| pdb_00001isx	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1NAE \| pdb_00001nae	Download File View File

Structure of CsCBM6-3 from Clostridium stercorarium in complex with xylotriose

Boraston, A.B., Notenboom, V., Warren, R.A.J., Kilburn, D.G., Rose, D.R., Davies, G.

(2003) J Mol Biology 327: 659-669

Released	2003-03-18
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermoclostridium stercorarium
Macromolecule	putative xylanase (protein)
Unique Ligands	CA
Unique branched monosaccharides	XYP

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1R87 \| pdb_00001r87	Download File View File

Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The complex of the WT enzyme with xylopentaose at 1.67A resolution

Bar, M., Golan, G., Zolotnitsky, G., Shoham, Y., Shoham, G.

(2004) Proc Natl Acad Sci U S A 101: 11275-11280

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, SO4, ZN
Unique branched monosaccharides	XYP

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1UR2 \| pdb_00001ur2	Download File View File

Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with arabinofuranose alpha 1,3 linked to xylotriose

Pell, G., Taylor, E.J., Gloster, T.M., Turkenburg, J.P., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J., Gilbert, H.J.

(2004) J Biological Chem 279: 9597

Released	2003-12-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio mixtus
Macromolecule	ENDOXYLANASE (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	AHR, XYP, XYS

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1UY3 \| pdb_00001uy3	Download File View File

Binding sub-site dissection of a family 6 carbohydrate-binding module by X-ray crystallography and isothermal titration calorimetry

Van Bueren, A.L., Boraston, A.B.

(2004) J Mol Biology 340: 869

Released	2004-06-18
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Thermoclostridium stercorarium
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)
Unique Ligands	CA, GOL, NA
Unique branched monosaccharides	XYP

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1V6V \| pdb_00001v6v	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	AHR, XYP

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1V6X \| pdb_00001v6x	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	GCV, XYP

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1XWQ \| pdb_00001xwq	Download File View File

Structure Of A Cold-Adapted Family 8 Xylanase

De Vos, D., Collins, T., Hoyoux, A., Savvides, S.N., Gerday, C., Van Beeumen, J.J., Feller, G.

(2005) J Mol Biology 354: 425-435

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	endo-1,4-beta-xylanase (protein)
Unique branched monosaccharides	XYP

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2QZ3 \| pdb_00002qz3	Download File View File

Crystal structure of a glycoside hydrolase family 11 xylanase from Bacillus subtilis in complex with xylotetraose

Vandermarliere, E., Bourgois, T.M., Strelkov, S.V., Delcour, J.A., Courtin, C.M., Rabijns, A.

(2008) Biochem J 410: 71-79

Released	2007-12-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	ACY
Unique branched monosaccharides	XYP

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2VGD \| pdb_00002vgd	Download File View File

Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose

Vardakou, M., Dumon, C., Flint, J.E., Murray, J.W., Christakopoulos, P., Weiner, D.P., Juge, N., Lewis, R.J., Gilbert, H.J.

(2008) J Mol Biology 375: 1293

Released	2007-12-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	ENXYN11A (protein)
Unique Ligands	FX3, GOL, NA
Unique branched monosaccharides	XYP

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2W5F \| pdb_00002w5f	Download File View File

High resolution crystallographic structure of the Clostridium thermocellum N-terminal endo-1,4-beta-D-xylanase 10B (Xyn10B) CBM22-1- GH10 modules complexed with xylohexaose

Najmudin, S., Pinheiro, B.A., Romao, M.J., Prates, J.A.M., Fontes, C.M.G.A.

(2010) J Struct Biol 172: 353

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	ACT, CD
Unique branched monosaccharides	XYP

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2WYS \| pdb_00002wys	Download File View File

High resolution crystallographic structure of the Clostridium thermocellum N-terminal endo-1,4-beta-D-xylanase 10B (Xyn10B) CBM22-1- GH10 modules complexed with xylohexaose

Najmudin, S., Pinheiro, B.A., Romao, M.J., Prates, J.A.M., Fontes, C.M.G.A.

(2010) J Struct Biol 172: 353

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA, PO4, XYP
Unique branched monosaccharides	XYP

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2WZE \| pdb_00002wze	Download File View File

High resolution crystallographic structure of the Clostridium thermocellum N-terminal endo-1,4-beta-D-xylanase 10B (Xyn10B) CBM22-1- GH10 modules complexed with xylohexaose

Najmudin, S., Pinheiro, B.A., Romao, M.J., Prates, J.A.M., Fontes, C.M.G.A.

(2010) J Struct Biol 172: 353

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CA, GOL, PO4
Unique branched monosaccharides	XYP

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3C7F \| pdb_00003c7f	Download File View File

Crystal structure of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from bacillus subtilis in complex with xylotriose.

Vandermarliere, E., Bourgois, T.M., Winn, M.D., Van Campenhout, S., Volckaert, G., Strelkov, S.V., Delcour, J.A., Rabijns, A., Courtin, C.M.

(2009) Biochem J 418: 39-47

Released	2008-11-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bacillus subtilis
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CA, FMT, GOL, NA
Unique branched monosaccharides	XYP

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3C7H \| pdb_00003c7h	Download File View File

Crystal structure of glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis in complex with AXOS-4-0.5.

Vandermarliere, E., Bourgois, T.M., Winn, M.D., Van Campenhout, S., Volckaert, G., Strelkov, S.V., Delcour, J.A., Rabijns, A., Courtin, C.M.

(2009) Biochem J 418: 39-47

Released	2008-11-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CA, FMT, GOL, NA
Unique branched monosaccharides	XYP

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3MMD \| pdb_00003mmd	Download File View File

Crystal structure of the W241A mutant of xylanase from Geobacillus stearothermophilus T-6 (XT6) complexed with hydrolyzed xylopentaose

Solomon, V., Zolotnitsky, G., Feinberg, H., Tabachnikov, O., Shoham, Y., Shoham, G.

To be published

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, NA, ZN
Unique branched monosaccharides	XYP

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3W26 \| pdb_00003w26	Download File View File

The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylotriose

Han, X., Gao, J., Shang, N., Huang, C.-H., Ko, T.-P., Zhu, Z., Wiegel, J., Shao, W., Guo, R.-T.

(2013) Proteins 81: 1256-1265

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermoanaerobacterium saccharolyticum JW/SL-YS485
Macromolecule	Glycoside hydrolase family 10 (protein)
Unique branched monosaccharides	XYP

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3WN1 \| pdb_00003wn1	Download File View File

Crystal Structure of Streptomyces coelicolor alpha-L-arabinofuranosidase in complex with xylotriose

Fujimoto, Z., Maehara, T., Ichinose, H., Michikawa, M., Harazono, K., Kaneko, S.

(2014) J Biological Chem 289: 7962-7972

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Extracellular exo-alpha-L-arabinofuranosidase (protein)
Unique Ligands	CA, CIT, CL, TRS
Unique branched monosaccharides	XYP

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3WP6 \| pdb_00003wp6	Download File View File

The complex structure of CDBFV E109A with xylotriose

Cheng, Y.S., Chen, C.C., Huang, C.H., Huang, T.Y., Ko, T.P., Huang, J.W., Wu, T.H., Liu, J.R., Guo, R.T.

(2014) J Biological Chem 289: 11020-11028

Released	2014-03-19
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Neocallimastix patriciarum
Macromolecule	CDBFV (protein)
Unique branched monosaccharides	XYP

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3ZKL \| pdb_00003zkl	Download File View File

Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with xylotriose

Ejby, M., Vujicic-Zagar, A., Fredslund, F., Svensson, B., Slotboom, D.J., Abou Hachem, M.

(2013) Mol Microbiol 90: 1100

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	PUTATIVE SUGAR TRANSPORTER SOLUTE-BINDING PROTEIN (protein)
Unique Ligands	1PE
Unique branched monosaccharides	XYP

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4D5I \| pdb_00004d5i	Download File View File

Hypocrea jecorina cellobiohydrolase Cel7A E212Q soaked with xylotriose.

Momeni, M.H., Ubhayasekera, W., Stahlberg, J., Hansson, H.

(2015) FEBS J 282: 2167

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Trichoderma reesei QM9414
Macromolecule	CELLULOSE 1,4-BETA-CELLOBIOSIDASE (protein)
Unique Ligands	CO, NAG, PEG
Unique branched monosaccharides	XYP

1 to 25 of 55 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B30 | pdb_00001b30

1B3X | pdb_00001b3x

1B3Y | pdb_00001b3y

1B3Z | pdb_00001b3z

1ISX | pdb_00001isx

1NAE | pdb_00001nae

1R87 | pdb_00001r87

1UR2 | pdb_00001ur2

1UY3 | pdb_00001uy3

1V6V | pdb_00001v6v

1V6X | pdb_00001v6x

1XWQ | pdb_00001xwq

2QZ3 | pdb_00002qz3

2VGD | pdb_00002vgd

2W5F | pdb_00002w5f

2WYS | pdb_00002wys

2WZE | pdb_00002wze

3C7F | pdb_00003c7f

3C7H | pdb_00003c7h

3MMD | pdb_00003mmd

3W26 | pdb_00003w26

3WN1 | pdb_00003wn1

3WP6 | pdb_00003wp6

3ZKL | pdb_00003zkl

4D5I | pdb_00004d5i