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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 3NP

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

Streptomyces venezuelae (19)

Taxonomy

Bacteria (19)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (5)
	2015 - 2019 (1)
	2020 - 2024 (4)

Enzyme Classification Name

Oxidoreductases (19)

Symmetry Type

Asymmetric (19)

SCOP Classification

All alpha proteins (14)

AllSelected

1 to 19 of 19 Structures

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Explore in 3D

2BVJ \| pdb_00002bvj	Download File View File

Ligand-free structure of cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	BME, DTT, HEM

Explore in 3D

2C6H \| pdb_00002c6h	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI, SO4

Explore in 3D

2C7X \| pdb_00002c7x	Download File View File

Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, NRB

Explore in 3D

2CA0 \| pdb_00002ca0	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

To be published

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

Explore in 3D

2CD8 \| pdb_00002cd8	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

Explore in 3D

2VZ7 \| pdb_00002vz7	Download File View File

Crystal structure of the YC-17-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, PXI

Explore in 3D

2VZM \| pdb_00002vzm	Download File View File

Crystal structure of the narbomycin-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	HEM, NRB

Explore in 3D

2WHW \| pdb_00002whw	Download File View File

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

Li, S., Chaulagain, M.R., Knauff, A.R., Podust, L.M., Montgomery, J., Sherman, D.H.

(2009) Proc Natl Acad Sci U S A 106: 18463

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE (protein)
Unique Ligands	1D4, HEM, SO4

Explore in 3D

2WI9 \| pdb_00002wi9	Download File View File

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

Li, S., Chaulagain, M.R., Knauff, A.R., Podust, L.M., Montgomery, J., Sherman, D.H.

(2009) Proc Natl Acad Sci U S A 106: 18463

Released	2009-10-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	1D2, HEM, SO4

Explore in 3D

3ZK5 \| pdb_00003zk5	Download File View File

PikC D50N mutant bound to the 10-DML analog with the 3-(N,N-dimethylamino)ethanoate anchoring group

Podust, L.M.

(2014) J Am Chem Soc 136: 4901

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	HEM, Z18

Explore in 3D

3ZPI \| pdb_00003zpi	Download File View File

PikC D50N mutant in P21 space group

Podust, L.M.

To be published

Released	2014-03-19
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	EDO, FMT, HEM, NA, TLA

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4B7D \| pdb_00004b7d	Download File View File

PikC bound to the 10-DML analog with the 3-(N,N-dimethylamino) propanoate anchoring group

Podust, L.M.

To be published

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	GOL, HEM, QLE

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4B7S \| pdb_00004b7s	Download File View File

PikC D50N mutant bound to the 10-DML analog with the 3-(N,N- dimethylamino)propanoate anchoring group

Podust, L.M.

(2014) J Am Chem Soc 136: 4901

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	GOL, HEM, QLE, SO4

Explore in 3D

4BF4 \| pdb_00004bf4	Download File View File

PikC D50N mutant in complex with the engineered cycloalkane substrate mimic bearing a termianl N,N-dimethylamino group

Podust, L.M.

To be published

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	17Q, HEM, SO4

Explore in 3D

4UMZ \| pdb_00004umz	Download File View File

PikC D50N mutant in complex with the engineered substrate mimic bearing a 2-dimethylaminomethylbenzoate group

Podust, L.M., Vieira, D.F.

To be published

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 HYDROXYLASE PIKC (protein)
Unique Ligands	HEM, XJO

Explore in 3D

7XBM \| pdb_00007xbm	Download File View File

Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	CAC, GOL, HEM, PEG, SO4

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7XBN \| pdb_00007xbn	Download File View File

Crystal Structure of YC-17-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	GOL, HEM, PEG, PXI

Explore in 3D

7XBO \| pdb_00007xbo	Download File View File

Crystal Structure of 10-dml-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun

Released	2023-02-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	E4H, GOL, HEM, PEG

Explore in 3D

8GUE \| pdb_00008gue	Download File View File

Crystal Structure of narbomycin-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

Li, G.B., Pan, Y.J., Li, S.Y., Gao, X.

(2023) Nat Commun 14: 1669-1669

Released	2023-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces venezuelae
Macromolecule	Cytochrome P450 monooxygenase PikC (protein)
Unique Ligands	EDO, HEM, NRB, PEG, SO4, TRS

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2BVJ | pdb_00002bvj

Ligand-free structure of cytochrome P450 PikC (CYP107L1)

2C6H | pdb_00002c6h

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

2C7X | pdb_00002c7x

Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)

2CA0 | pdb_00002ca0

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

2CD8 | pdb_00002cd8

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

2VZ7 | pdb_00002vz7

Crystal structure of the YC-17-bound PikC D50N mutant

2VZM | pdb_00002vzm

Crystal structure of the narbomycin-bound PikC D50N mutant

2WHW | pdb_00002whw

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

2WI9 | pdb_00002wi9

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

3ZK5 | pdb_00003zk5

PikC D50N mutant bound to the 10-DML analog with the 3-(N,N-dimethylamino)ethanoate anchoring group

3ZPI | pdb_00003zpi

PikC D50N mutant in P21 space group

4B7D | pdb_00004b7d

PikC bound to the 10-DML analog with the 3-(N,N-dimethylamino) propanoate anchoring group

4B7S | pdb_00004b7s

PikC D50N mutant bound to the 10-DML analog with the 3-(N,N- dimethylamino)propanoate anchoring group

4BF4 | pdb_00004bf4

PikC D50N mutant in complex with the engineered cycloalkane substrate mimic bearing a termianl N,N-dimethylamino group

4UMZ | pdb_00004umz

PikC D50N mutant in complex with the engineered substrate mimic bearing a 2-dimethylaminomethylbenzoate group

7XBM | pdb_00007xbm

Crystal Structure of cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

7XBN | pdb_00007xbn

Crystal Structure of YC-17-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

7XBO | pdb_00007xbo

Crystal Structure of 10-dml-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

8GUE | pdb_00008gue

Crystal Structure of narbomycin-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238

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Scientific Name of Source Organism

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Symmetry Type

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2BVJ | pdb_00002bvj

2C6H | pdb_00002c6h

2C7X | pdb_00002c7x

2CA0 | pdb_00002ca0

2CD8 | pdb_00002cd8

2VZ7 | pdb_00002vz7

2VZM | pdb_00002vzm

2WHW | pdb_00002whw

2WI9 | pdb_00002wi9

3ZK5 | pdb_00003zk5

3ZPI | pdb_00003zpi

4B7D | pdb_00004b7d

4B7S | pdb_00004b7s

4BF4 | pdb_00004bf4

4UMZ | pdb_00004umz

7XBM | pdb_00007xbm

7XBN | pdb_00007xbn

7XBO | pdb_00007xbo

8GUE | pdb_00008gue