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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = CRT

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Thermochromatium tepidum (9)
	Gemmatimonas phototrophica (4)
	Allochromatium tepidum (3)
	Halorhodospira halophila (3)
	Allochromatium vinosum DSM 180 (2)
	Cereibacter sphaeroides (2)
	Rhodopseudomonas palustris CGA009 (2)
	Rhodospirillum rubrum (2)
	Rhodospirillum rubrum ATCC 11170 (2)
	Roseospirillum parvum (2)

Taxonomy

Bacteria (30)

Experimental Method

	ELECTRON MICROSCOPY (21)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (10)
	2.5 - 3.0 (10)
	3.0 - 3.5 (9)

Release Date

	1990 - 1994 (2)
	2000 - 2004 (1)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (15)
	2025 - 2029 (7)

Membrane Protein Annotation

	PDBTM (22)
	MemProtMD (10)
	OPM (10)
	mpstruc (7)

Symmetry Type

	Asymmetric (24)
	Cyclic (6)

SCOP Classification

	Membrane and cell surface proteins and peptides (8)
	All beta proteins (8)
	All alpha proteins (4)
	Small proteins (1)

AllSelected

1 to 25 of 30 Structures

Page 1 of 2

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1EYS \| pdb_00001eys	Download File View File

CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM

Nogi, T., Fathir, I., Kobayashi, M., Nozawa, T., Miki, K.

(2000) Proc Natl Acad Sci U S A 97: 13561-13566

Released	2000-12-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermochromatium tepidum
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (protein)
Unique Ligands	BCL, BGL, BPH, CRT, FE, HEM, LDA, MQ8, PEF

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1PSS \| pdb_00001pss	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF SITE-DIRECTED MUTANTS OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES

Chirino, A.J., Feher, G., Rees, D.C.

(1994) Biochemistry 33: 4584-4593

Released	1994-04-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (protein)
Unique Ligands	BCL, BPH, CRT, FE, U10

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1PST \| pdb_00001pst	Download File View File

CRYSTALLOGRAPHIC ANALYSES OF SITE-DIRECTED MUTANTS OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES

Chirino, A.J., Feher, G., Rees, D.C.

(1994) Biochemistry 33: 4584-4593

Released	1994-04-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	PHOTOSYNTHETIC REACTION CENTER (protein)
Unique Ligands	BCL, BPH, CRT, FE, U10

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3WMM \| pdb_00003wmm	Download File View File

Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form

Niwa, S., Takeda, K., Wang-Otomo, Z.-Y., Miki, K.

(2014) Nature 508: 228-232

Released	2014-04-09
Method	X-RAY DIFFRACTION 3.008 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 6
Unique Ligands	BCL, BPH, CA, CRT, FE, HEM, MQ8, PEF, PGW, PO4, UQ8

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4V8K \| pdb_00004v8k	Download File View File

Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form

Niwa, S., Takeda, K., Wang-Otomo, Z.-Y., Miki, K.

(2014) Nature 508: 228-232

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.006 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 6
Unique Ligands	BCL, BPH, CA, CRT, FE, HEM, MQ8, PEF, PO4, UQ8

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5B5M \| pdb_00005b5m	Download File View File

Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum

Wang-Otomo, Z.-Y., Yu, L.-J.

(2016) Biochemistry 55: 6495-6504

Released	2017-03-22
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 6
Unique Ligands	BCL, BPH, CRT, FE, HEM, MQ8, PEF, PGW, PO4, SR, UQ8

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5B5N \| pdb_00005b5n	Download File View File

Crystal structure of the Ba-substituted LH1-RC complex from Tch. tepidum

Wang-Otomo, Z.-Y., Yu, L.-J.

(2016) Biochemistry 55: 6495-6504

Released	2017-03-22
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 6
Unique Ligands	BA, BCL, BPH, CRT, FE, HEM, MQ8, PEF, PGW, PO4, UQ8

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5Y5S \| pdb_00005y5s	Download File View File

Structure of photosynthetic LH1-RC super-complex at 1.9 angstrom resolution

Yu, L.-J., Suga, M., Wang-Otomo, Z.-Y., Shen, J.-R.

(2018) Nature 556: 209-213

Released	2018-04-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 6
Unique Ligands	BCL, BPH, CA, CDL, CRT, FE, GOL, HEC, LDA, LHG, LMT, MG, MQ8, PEF, PGV, SO4, UNL, UQ8

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6Z5R \| pdb_00006z5r	Download File View File

RC-LH1(16) complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	H subunit of photosynthetic reaction center complex (protein) Light-harvesting complex 1 alpha chain (protein) Light-harvesting complex 1 beta chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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6Z5S \| pdb_00006z5s	Download File View File

RC-LH1(14)-W complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Unique protein chains: 6
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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7C52 \| pdb_00007c52	Download File View File

Co-crystal structure of a photosynthetic LH1-RC in complex with electron donor HiPIP

Yu, L.-J., Wang-Otomo, Z.-Y.

(2021) Nat Commun 12: 1104-1104

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Thermochromatium tepidum
Macromolecule	Unique protein chains: 7
Unique Ligands	BCL, BPH, CA, CDL, CRT, FE, GOL, HEM, LHG, LMT, MQ8, PEF, PGV, SF4, SO4, UQ8

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7EQD \| pdb_00007eqd	Download File View File

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM

Tani, K., Kanno, R., Ji, X.-C., Yu, L.-J., Hall, M., Kimura, Y., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Wang-Otomo, Z.-Y.

(2021) Biochemistry

Released	2021-08-18
Method	ELECTRON MICROSCOPY 2.76 Å
Organisms	Rhodospirillum rubrum Rhodospirillum rubrum ATCC 11170
Macromolecule	Light-harvesting protein B-870 alpha chain (protein) Light-harvesting protein B-870 beta chain (protein) Photoreaction center protein H (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	07D, 08I, CDL, CRT, FE, LMT, PEF, PGV, RQ0, U10

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7O0U \| pdb_00007o0u	Download File View File

Cryo-EM structure (model_1a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.4 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.35 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 9
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0V \| pdb_00007o0v	Download File View File

Cryo-EM structure (model_2a) of the RC-dLH complex from Gemmatimonas phototrophica at 2.5 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 12
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0W \| pdb_00007o0w	Download File View File

Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.47 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 11
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7O0X \| pdb_00007o0x	Download File View File

Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A

Qian, P., Koblizek, M.

(2022) Sci Adv 8: eabk3139-eabk3139

Released	2022-03-02
Method	ELECTRON MICROSCOPY 2.44 Å
Organisms	Gemmatimonas phototrophica
Macromolecule	Unique protein chains: 11
Unique Ligands	0V9, BCL, BPH, CD4, CRT, FE, HEC, LMT, MQ8, NDG, PGW, UYH, V75, V7B, V7N
Unique branched monosaccharides	MAN, RAM

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7OY8 \| pdb_00007oy8	Download File View File

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex

Qian, P., Croll, T.I., Castro, H.P., Moriarty, N.W., sader, K., Hunter, C.N.

(2021) Biochem J 478: 3253-3263

Released	2021-09-22
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Unique protein chains: 6
Unique Ligands	07D, BPH, CD4, CL, CRT, FE, LMT, PGW, PO4, RQ0, U10

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7VRJ \| pdb_00007vrj	Download File View File

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum

Tani, K., Kobayashi, K., Hosogi, N., Ji, X.-C., Nagashima, S., Nagashima, K.V.P., Tsukatani, Y., Kanno, R., Hall, M., Yu, L.-J., Ishikawa, I., Okura, Y., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.

(2022) J Biological Chem 298: 101967-101967

Released	2022-05-04
Method	ELECTRON MICROSCOPY 2.81 Å
Organisms	Allochromatium tepidum
Macromolecule	Unique protein chains: 9
Unique Ligands	BCL, BPH, CA, CDL, CRT, DGA, FE, HEC, LDA, LMT, MG, MQ8, PGV, PLM, UQ8

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8JC8 \| pdb_00008jc8	Download File View File

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

Wang, G.-L., Yan, Y.-H., Yu, L.-J.

(2024) Biochim Biophys Acta Bioenerg 1865: 149050-149050

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Thermochromatium tepidum
Macromolecule	LH1 alpha polypeptide (protein) LH1 beta polypeptide (protein)
Unique Ligands	8K6, BCL, CA, CRT

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8JC9 \| pdb_00008jc9	Download File View File

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

Wang, G.-L., Yan, Y.-H., Yu, L.-J.

(2024) Biochim Biophys Acta Bioenerg 1865: 149050-149050

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Thermochromatium tepidum
Macromolecule	LH1 alpha polypeptide (protein) LH1 beta polypeptide (protein)
Unique Ligands	BCL, CA, CRT, D12

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8WDU \| pdb_00008wdu	Download File View File

Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density

Tani, K., Kanno, R., Harada, A., Kobayashi, A., Minamino, A., Nakamura, N., Ji, X.-C., Purba, E.R., Hall, M., Yu, L.-J., Madigan, M.T., Mizoguchi, A., Iwasaki, K., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.

(2024) Commun Biol 7: 176-176

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.24 Å
Organisms	Allochromatium vinosum DSM 180
Macromolecule	Unique protein chains: 9
Unique Ligands	BCL, BPH, CA, CDL, CRT, FE, HEM, LDA, LMT, MG, MQ8, PGV, PLM, UQ8, Z41

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8WDV \| pdb_00008wdv	Download File View File

Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE

(2024) Commun Biol 7: 176-176

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.24 Å
Organisms	Allochromatium vinosum DSM 180
Macromolecule	Unique protein chains: 9
Unique Ligands	BCL, BPH, CA, CDL, CRT, FE, HEM, LDA, LMT, MG, MQ8, PGV, PLM, UQ8, Z41

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8YPB \| pdb_00008ypb	Download File View File

Cryo-EM structure of the LH1 complex from Allochromatium tepidum

Wang, G.-L., Sun, S., Yu, L.-J.

(2025) Biomolecules 15:

Released	2025-02-19
Method	ELECTRON MICROSCOPY 2.45 Å
Organisms	Allochromatium tepidum
Macromolecule	Beta subunit of light-harvesting 1 complex (protein) LH1 alpha polypeptide (protein)
Unique Ligands	BCL, CA, CRT

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8YPD \| pdb_00008ypd	Download File View File

Cryo-EM structure of the LH1 complex from Allochromatium tepidum

Wang, G.-L., Sun, S., Yu, L.-J.

(2025) Biomolecules 15:

Released	2025-02-19
Method	ELECTRON MICROSCOPY 2.78 Å
Organisms	Allochromatium tepidum
Macromolecule	Beta subunit of light-harvesting 1 complex (protein) LH1 alpha subunit (protein)
Unique Ligands	BCL, CRT

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8Z81 \| pdb_00008z81	Download File View File

Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila

Tani, K., Nagashima, K.V.P., Kanno, R., Hiwatashi, N., Kawakami, M., Nakata, K., Nagashima, S., Inoue, K., Takaichi, S., Purba, E.R., Hall, M., Yu, L.-J., Madigan, M.T., Mizoguchi, A., Humbel, B.M., Kimura, Y., Wang-Otomo, Z.-Y.

(2025) Nat Commun 16: 1410-1410

Released	2025-02-19
Method	ELECTRON MICROSCOPY 2.2 Å
Organisms	Halorhodospira halophila
Macromolecule	Unique protein chains: 6
Unique Ligands	BCL, CRT, LMT, PGV

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EYS | pdb_00001eys

1PSS | pdb_00001pss

1PST | pdb_00001pst

3WMM | pdb_00003wmm

4V8K | pdb_00004v8k

5B5M | pdb_00005b5m

5B5N | pdb_00005b5n

5Y5S | pdb_00005y5s

6Z5R | pdb_00006z5r

6Z5S | pdb_00006z5s

7C52 | pdb_00007c52

7EQD | pdb_00007eqd

7O0U | pdb_00007o0u

7O0V | pdb_00007o0v

7O0W | pdb_00007o0w

7O0X | pdb_00007o0x

7OY8 | pdb_00007oy8

7VRJ | pdb_00007vrj

8JC8 | pdb_00008jc8

8JC9 | pdb_00008jc9

8WDU | pdb_00008wdu

8WDV | pdb_00008wdv

8YPB | pdb_00008ypb

8YPD | pdb_00008ypd

8Z81 | pdb_00008z81