RCSB PDB: Search

3JXT \| pdb_00003jxt	Download File View File

Crystal structure of the third PDZ domain of SAP-102 in complex with a fluorogenic peptide-based ligand

Sainlos, M., Olivier, N.B., Imperiali, B.

(2013) J Am Chem Soc 135: 4580-4583

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Disks large homolog 3 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	ACT

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4X3H \| pdb_00004x3h	Download File View File

CRYSTAL STRUCTURE OF ARC N-LOBE COMPLEXED WITH STARGAZIN PEPTIDE

zhang, W., ward, m., leahy, d., worley, p.

(2015) Neuron 86: 490-500

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.401 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Activity-regulated cytoskeleton-associated protein (protein) VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-2 SUBUNIT (protein)

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5KBS \| pdb_00005kbs	Download File View File

Cryo-EM structure of GluA2-0xSTZ at 8.7 Angstrom resolution

Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.

(2016) Science 353: 83-86

Released	2016-07-13
Method	ELECTRON MICROSCOPY 8.7 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	NAG, ZK1

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5KBT \| pdb_00005kbt	Download File View File

Cryo-EM structure of GluA2-1xSTZ complex at 6.4 Angstrom resolution

Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.

(2016) Science 353: 83-86

Released	2016-07-13
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	NAG, ZK1

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5KBU \| pdb_00005kbu	Download File View File

Cryo-EM structure of GluA2-2xSTZ complex at 7.8 Angstrom resolution

Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.

(2016) Science 353: 83-86

Released	2016-07-13
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	NAG, ZK1

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5KK2 \| pdb_00005kk2	Download File View File

Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy

Zhao, Y., Chen, S., Yoshioka, C., Baconguis, I., Gouaux, E.

(2016) Nature 536: 108-111

Released	2016-07-06
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)

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5VOT \| pdb_00005vot	Download File View File

Structure of AMPA receptor-TARP complex

Chen, S., Zhao, Y., Wang, Y.S., Shekhar, M., Tajkhorshid, E., Gouaux, E.

(2017) Cell 170: 1234-1246.e14

Released	2017-07-12
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)

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5VOU \| pdb_00005vou	Download File View File

Structure of AMPA receptor-TARP complex

Chen, S., Zhao, Y., Wang, Y.S., Shekhar, M., Tajkhorshid, E., Gouaux, E.

(2017) Cell 170: 1234-1246.e14

Released	2017-07-12
Method	ELECTRON MICROSCOPY 6.4 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)

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5VOV \| pdb_00005vov	Download File View File

Structure of AMPA receptor-TARP complex

Zhao, Y., Chen, S., Wang, Y.S., Shekhar, M., Tajkhorshid, E., Gouaux, E.

(2017) Cell 170: 1234-1246.e14

Released	2017-07-12
Method	ELECTRON MICROSCOPY 7.7 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)

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5WEO \| pdb_00005weo	Download File View File

Activated GluA2 complex bound to glutamate, cyclothiazide, and STZ in digitonin

Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.

(2017) Nature 549: 60-65

Released	2017-08-02
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit chimera (protein)
Unique Ligands	CYZ, GLU

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6DLZ \| pdb_00006dlz	Download File View File

Open state GluA2 in complex with STZ after micelle signal subtraction

Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.

(2018) Neuron 99: 956-968.e4

Released	2018-08-22
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CYZ, GLU

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6DM0 \| pdb_00006dm0	Download File View File

Open state GluA2 in complex with STZ and blocked by IEM-1460, after micelle signal subtraction

Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.

(2018) Neuron 99: 956-968.e4

Released	2018-08-22
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CYZ, GLU, GZD

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6DM1 \| pdb_00006dm1	Download File View File

Open state GluA2 in complex with STZ and blocked by NASPM, after micelle signal subtraction

Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.

(2018) Neuron 99: 956-968.e4

Released	2018-08-22
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CYZ, GLU, GYY

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6O9G \| pdb_00006o9g	Download File View File

Open state GluA2 in complex with STZ and blocked by AgTx-636, after micelle signal subtraction

Twomey, E.C., Yelshanskaya, M.V., Vassilevski, A.A., Sobolevsky, A.I.

(2018) Neuron 99: 956-968.e4

Released	2019-03-20
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CYZ, GLU, LU7

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8C1R \| pdb_00008c1r	Download File View File

Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2

Zhang, D., Ivica, J., Krieger, J.M., Ho, H., Yamashita, K., Cais, O., Greger, I.

(2023) Nature 621: 877-882

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	OLC, PLM, POV, ZK1

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8C1S \| pdb_00008c1s	Download File View File

Transmembrane domain of resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma 2

Zhang, D., Ivica, J., Krieger, J.M., Ho, H., Yamashita, K., Cais, O., Greger, I.

(2023) Nature 621: 877-882

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	OLC, PLM, POV

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8FP4 \| pdb_00008fp4	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CL

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8FP9 \| pdb_00008fp9	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.44 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CA, CL

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8FPG \| pdb_00008fpg	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.32 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CL

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8FPS \| pdb_00008fps	Download File View File

GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.38 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CL

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8FQ1 \| pdb_00008fq1	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 5.59 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CA

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8FQ5 \| pdb_00008fq5	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.34 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CL

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8FQB \| pdb_00008fqb	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.36 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CA, CL

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8FQF \| pdb_00008fqf	Download File View File

GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)

Nakagawa, T.

(2024) Nat Struct Mol Biol 31: 688-700

Released	2024-02-28
Method	ELECTRON MICROSCOPY 2.29 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	CL

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8P3Q \| pdb_00008p3q	Download File View File

Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3

Zhang, D., Krieger, J.M., Yamashita, K., Greger, I.

(2023) Nature 621: 877-882

Released	2023-08-30
Method	ELECTRON MICROSCOPY 2.95 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein) Voltage-dependent calcium channel gamma-2 subunit (protein)
Unique Ligands	OLC, PLM, POV

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

3JXT | pdb_00003jxt

4X3H | pdb_00004x3h

5KBS | pdb_00005kbs

5KBT | pdb_00005kbt

5KBU | pdb_00005kbu

5KK2 | pdb_00005kk2

5VOT | pdb_00005vot

5VOU | pdb_00005vou

5VOV | pdb_00005vov

5WEO | pdb_00005weo

6DLZ | pdb_00006dlz

6DM0 | pdb_00006dm0

6DM1 | pdb_00006dm1

6O9G | pdb_00006o9g

8C1R | pdb_00008c1r

8C1S | pdb_00008c1s

8FP4 | pdb_00008fp4

8FP9 | pdb_00008fp9

8FPG | pdb_00008fpg

8FPS | pdb_00008fps

8FQ1 | pdb_00008fq1

8FQ5 | pdb_00008fq5

8FQB | pdb_00008fqb

8FQF | pdb_00008fqf

8P3Q | pdb_00008p3q