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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "ELOC"

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Search Summary

This query matches 141 Structures.

Refinements

Structure Determination Methodology

experimental (141)

Scientific Name of Source Organism

	Homo sapiens (139)
	Human immunodeficiency virus 1 (6)
	synthetic construct (6)
	Spodoptera frugiperda (3)
	Sus scrofa (3)
	Xenopus laevis (3)
	Bos taurus (1)
	Escherichia coli (1)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (1)
	Simian immunodeficiency virus (1)

More...

Taxonomy

	Eukaryota (141)
	Riboviria (9)
	other sequences (6)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (98)
	ELECTRON MICROSCOPY (43)

Polymer Entity Type

	Protein (141)
	RNA (7)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (18)
	2.0 - 2.5 (35)
	2.5 - 3.0 (34)
	3.0 - 3.5 (27)
	3.5 - 4.0 (19)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (34)
	2020 - 2024 (103)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (32)
	Hydrolases (21)
	Isomerases (2)
	Oxidoreductases (2)
	Ligases (1)

Symmetry Type

	Asymmetric (133)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	All beta proteins (20)
	Artifacts (19)
	All alpha proteins (4)

AllSelected

1 to 25 of 141 Structures

Page 1 of 6

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4N9F \| pdb_00004n9f	Download File View File

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex

Guo, Y.Y., Dong, L.Y., Huang, Z.W.

(2014) Nature 505: 229-233

Released	2014-01-08
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Core-binding factor subunit beta (protein) Cullin-5 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Virion infectivity factor (protein)
Unique Ligands	ZN

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5N4W \| pdb_00005n4w	Download File View File

Crystal structure of the Cul2-Rbx1-EloBC-VHL ubiquitin ligase complex

Cardote, T.A.F., Gadd, M.S., Ciulli, A.

(2017) Structure 25: 901-911.e3

Released	2017-06-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Homo sapiens
Macromolecule	Cullin-2 (protein) E3 ubiquitin-protein ligase RBX1 (protein) Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	ZN

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5NVV \| pdb_00005nvv	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-4-hydroxy-1-((S)-2-(2-hydroxyacetamido)-3,3-dimethylbutanoyl)-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BT

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5NVW \| pdb_00005nvw	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BW

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5NVX \| pdb_00005nvx	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-fluorocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	4YY

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5NVY \| pdb_00005nvy	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-acetamidopropanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl) pyrrolidine-2-carboxamide (ligand 11)

Soares, P., Gadd, M.S., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9B5

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5NVZ \| pdb_00005nvz	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetylcyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 16)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BN

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5NW0 \| pdb_00005nw0	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetamidocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 17)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BK

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5NW1 \| pdb_00005nw1	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclobutanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 18)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BH

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5NW2 \| pdb_00005nw2	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-3,3-dimethyl-2-(oxetane-3-carboxamido)butanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 19)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9B8

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6BVB \| pdb_00006bvb	Download File View File

Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C

Tarade, D., Ohh, M., Lee, J.E.

(2018) Nat Commun 9: 3359-3359

Released	2018-08-01
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Hypoxia-Inducible Factor 2 alpha (protein) von Hippel-Lindau disease tumor suppressor (protein)

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6C5X \| pdb_00006c5x	Download File View File

Crystal Structure of SOCS1 in complex with ElonginB and ElonginC

Kershaw, N.J., Laktyushin, A., Babon, J.J.

(2018) Nat Commun 9: 1558-1558

Released	2018-05-02
Method	X-RAY DIFFRACTION 3.105 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Elongin-B (protein) Elongin-C (protein) GP130 peptide fragment (protein) Suppressor of Cytokine Signalling 1 (protein)

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6FMI \| pdb_00006fmi	Download File View File

pVHL:EloB:EloC in complex with N-((S)-1-((2S,4R)-4-Hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamothioyl) pyrrolidin-1-yl)-1-oxopropan-2-yl)acetamide (ligand 2)

Soares, P., Lucas, X., Ciulli, A.

(2018) Bioorg Med Chem 26: 2992-2995

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	DV2

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6FMJ \| pdb_00006fmj	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-Acetamidopropanethioyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl) benzyl)pyrrolidine-2-carboxamide (ligand 3)

Soares, P., Lucas, X., Ciulli, A.

(2018) Bioorg Med Chem 26: 2992-2995

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	DV5

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6FMK \| pdb_00006fmk	Download File View File

pVHL:EloB:EloC in complex with N-((S)-1-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamothioyl) pyrrolidin-1-yl)-1-thioxopropan-2-yl)acetamide (ligand 4)

Soares, P., Lucas, X., Ciulli, A.

(2018) Bioorg Med Chem 26: 2992-2995

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	DV8

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6GFX \| pdb_00006gfx	Download File View File

pVHL:EloB:EloC in complex with modified HIF-1a CODD peptide containing (3R,4S)-3-fluoro-4-hydroxyproline (ligand 13a)

Castro, G.V., Testa, A., Ciulli, A.

(2018) J Am Chem Soc 140: 9299-9313

Released	2018-07-11
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) FLUORINATED HYPOXIA-INDUCIBLE FACTOR 1 ALPHA PEPTIDE (protein) von Hippel-Lindau disease tumor suppressor (protein)

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6GFY \| pdb_00006gfy	Download File View File

pVHL:EloB:EloC in complex with modified VH032 containing (3R,4S)-3-fluoro-4-hydroxyproline (ligand 14a)

Gadd, M.S., Testa, A., Ciulli, A.

(2018) J Am Chem Soc 140: 9299-9313

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	EXH

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6GFZ \| pdb_00006gfz	Download File View File

pVHL:EloB:EloC in complex with modified VH032 containing (3S,4S)-3-fluoro-4-hydroxyproline (ligand 14b)

Gadd, M.S., Testa, A., Ciulli, A.

(2018) J Am Chem Soc 140: 9299-9313

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	EXE

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6GMN \| pdb_00006gmn	Download File View File

pVHL:EloB:EloC in complex with methyl 4H-furo[3,2-b]pyrrole-5-carboxylate

Van Molle, I., Lucas, X., Ciulli, A.

(2018) J Med Chem 61: 7387-7393

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	ACT, F4E

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6GMQ \| pdb_00006gmq	Download File View File

pVHL:EloB:EloC in complex with (4-(1H-pyrrol-1-yl)phenyl)methanol

Van Molle, I., Lucas, X., Ciulli, A.

(2018) J Med Chem 61: 7387-7393

Released	2018-08-22
Method	X-RAY DIFFRACTION 2.755 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	ACT, F4K, IPA

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6GMR \| pdb_00006gmr	Download File View File

pVHL:EloB:EloC in complex with (4-(1H-pyrrol-1-yl)phenyl)methanol

Van Molle, I., Lucas, X., Ciulli, A.

(2018) J Med Chem 61: 7387-7393

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Hypoxia inducible factor 1alpha, residues 559-577 (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	F4K, GOL, SO4

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6GMX \| pdb_00006gmx	Download File View File

pVHL:EloB:EloC in complex with 6-chlorothiochroman-4-one

Van Molle, I., Lucas, X., Ciulli, A.

(2018) J Med Chem 61: 7387-7393

Released	2018-08-08
Method	X-RAY DIFFRACTION 2.533 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	ACT, F7B, IPA

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6HAX \| pdb_00006hax	Download File View File

Crystal structure of PROTAC 2 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB

Roy, M., Bader, G., Diers, E., Trainor, N., Farnaby, W., Ciulli, A.

(2019) Nat Chem Biol 15: 672-680

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Probable global transcription activator SNF2L2 (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	EDO, EPE, FWZ

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6HAY \| pdb_00006hay	Download File View File

Crystal structure of PROTAC 1 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB

Roy, M., Bader, G., Diers, E., Trainor, N., Farnaby, W., Ciulli, A.

(2019) Nat Chem Biol 15: 672-680

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Probable global transcription activator SNF2L2 (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	EDO, EPE, FMT, FX8

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6HR2 \| pdb_00006hr2	Download File View File

Crystal structure of PROTAC 2 in complex with the bromodomain of human SMARCA4 and pVHL:ElonginC:ElonginB

Roy, M., Bader, G., Diers, E., Trainor, N., Farnaby, W., Ciulli, A.

(2019) Nat Chem Biol 15: 672-680

Released	2019-06-12
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Transcription activator BRG1 (protein) von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	DMS, EDO, FWZ

1 to 25 of 141 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4N9F | pdb_00004n9f

5N4W | pdb_00005n4w

5NVV | pdb_00005nvv

5NVW | pdb_00005nvw

5NVX | pdb_00005nvx

5NVY | pdb_00005nvy

5NVZ | pdb_00005nvz

5NW0 | pdb_00005nw0

5NW1 | pdb_00005nw1

5NW2 | pdb_00005nw2

6BVB | pdb_00006bvb

6C5X | pdb_00006c5x

6FMI | pdb_00006fmi

6FMJ | pdb_00006fmj

6FMK | pdb_00006fmk

6GFX | pdb_00006gfx

6GFY | pdb_00006gfy

6GFZ | pdb_00006gfz

6GMN | pdb_00006gmn

6GMQ | pdb_00006gmq

6GMR | pdb_00006gmr

6GMX | pdb_00006gmx

6HAX | pdb_00006hax

6HAY | pdb_00006hay

6HR2 | pdb_00006hr2