RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "SKP1"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 88 Structures.

Refinements

Structure Determination Methodology

experimental (88)

Scientific Name of Source Organism

	Homo sapiens (54)
	Arabidopsis thaliana (17)
	Saccharomyces cerevisiae (9)
	Oryza sativa Japonica Group (6)
	Saccharomyces cerevisiae S288C (4)
	Kluyveromyces lactis (3)
	Bos taurus (1)
	Legionella pneumophila (1)
	Mus musculus (1)
	Oryza sativa tropical japonica subgroup (1)

More...

Taxonomy

	Eukaryota (88)
	Eukaryota (eukaryotes) (4)
	Bacteria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (48)
	ELECTRON MICROSCOPY (39)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (88)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (7)
	2.5 - 3.0 (32)
	3.0 - 3.5 (22)
	3.5 - 4.0 (15)
	4.0 - 4.5 (6)
	> 4.5 (2)

Release Date

	2005 - 2009 (13)
	2010 - 2014 (7)
	2015 - 2019 (30)
	2020 - 2024 (35)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (2)
	Oxidoreductases (4)

Symmetry Type

	Asymmetric (86)
	Cyclic (10)
	Dihedral (3)

SCOP Classification

	All alpha proteins (26)
	Alpha and beta proteins (a+b) (22)
	Artifacts (3)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 88 Structures

Page 1 of 4

Sort by

Explore in 3D

2ASS \| pdb_00002ass	Download File View File

Crystal structure of the Skp1-Skp2-Cks1 complex

Hao, B., Zhang, N., Schulman, B.A., Wu, G., Pagano, M., Pavletich, N.P.

(2005) Mol Cell 20: 9-19

Released	2005-10-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1A (protein) S-phase kinase-associated protein 2 (protein)
Unique Ligands	BEN, PO4

Explore in 3D

2AST \| pdb_00002ast	Download File View File

Crystal structure of Skp1-Skp2-Cks1 in complex with a p27 peptide

Hao, B., Zhang, N., Schulman, B.A., Wu, G., Pagano, M., Pavletich, N.P.

(2005) Mol Cell 20: 9-19

Released	2005-10-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase inhibitor 1B (protein) Cyclin-dependent kinases regulatory subunit 1 (protein) S-phase kinase-associated protein 1A (protein) S-phase kinase-associated protein 2 (protein)
Unique Ligands	BEN

Explore in 3D

2OVP \| pdb_00002ovp	Download File View File

Structure of the Skp1-Fbw7 complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein)

Explore in 3D

2OVQ \| pdb_00002ovq	Download File View File

Structure of the Skp1-Fbw7-CyclinEdegC complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein) cyclinE C-terminal degron (protein)
Unique Ligands	SO4

Explore in 3D

2OVR \| pdb_00002ovr	Download File View File

Structure of the Skp1-Fbw7-CyclinEdegN complex

Hao, B., Oehlmann, S., Sowa, M.E., Harper, J.W., Pavletich, N.P.

(2007) Mol Cell 26: 131-143

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat protein 7 (protein) S-phase kinase-associated protein 1A (protein) cyclinE N-terminal degron (protein)
Unique Ligands	SO4

Explore in 3D

2P1M \| pdb_00002p1m	Download File View File

TIR1-ASK1 complex structure

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IHP

Explore in 3D

2P1N \| pdb_00002p1n	Download File View File

Mechanism of Auxin Perception by the TIR1 Ubiqutin Ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, C., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	CFA, IHP

Explore in 3D

2P1O \| pdb_00002p1o	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IHP, NLA

Explore in 3D

2P1P \| pdb_00002p1p	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IAC, IHP

Explore in 3D

2P1Q \| pdb_00002p1q	Download File View File

Mechanism of Auxin Perception by the TIR1 ubiquitin ligase

Tan, X., Calderon-Villalobos, L.I.A., Sharon, M., Robinson, C.V., Estelle, M., Zheng, N.

(2007) Nature 446: 640-645

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin-responsive protein IAA7 (protein) SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 protein (protein)
Unique Ligands	IAC, IHP

Explore in 3D

3C6N \| pdb_00003c6n	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X., Zheng, N., Hayashi, K.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S8, IHP

Explore in 3D

3C6O \| pdb_00003c6o	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S2, IHP

Explore in 3D

3C6P \| pdb_00003c6p	Download File View File

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling

Tan, X.

(2008) Proc Natl Acad Sci U S A 105: 5632-5637

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	SKP1-like protein 1A (protein) TRANSPORT INHIBITOR RESPONSE 1 (protein)
Unique Ligands	2S3, IHP

Explore in 3D

3L2O \| pdb_00003l2o	Download File View File

Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase

Li, Y., Hao, B.

(2010) J Biological Chem 285: 13896-13906

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	F-box only protein 4 (protein) S-phase kinase-associated protein 1 (protein)

Explore in 3D

3MKS \| pdb_00003mks	Download File View File

Crystal Structure of yeast Cdc4/Skp1 in complex with an allosteric inhibitor SCF-I2

Orlicky, S., Sicheri, F., Tyers, M., Tang, X.

(2010) Nat Biotechnol 28: 733-737

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division control protein 4 (protein) Suppressor of kinetochore protein 1 (protein)
Unique Ligands	C1C, GOL, SO4

Explore in 3D

3OGK \| pdb_00003ogk	Download File View File

Structure of COI1-ASK1 in complex with coronatine and an incomplete JAZ1 degron

Sheard, L.B., Tan, X., Mao, H., Withers, J., Ben-Nissan, G., Hinds, T.R., Hsu, F., Sharon, M., Browse, J., He, S.Y., Rizo, J., Howe, G.A., Zheng, N.

(2010) Nature 468: 400-405

Released	2010-10-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	Coronatine-insensitive protein 1 (protein) JAZ1 incomplete degron peptide (protein) SKP1-like protein 1A (protein)
Unique Ligands	OGK, PO4

Explore in 3D

3OGL \| pdb_00003ogl	Download File View File

Structure of COI1-ASK1 in complex with JA-isoleucine and the JAZ1 degron

Sheard, L.B., Tan, X., Mao, H., Withers, J., Ben-Nissan, G., Hinds, T.R., Hsu, F., Sharon, M., Browse, J., He, S.Y., Rizo, J., Howe, G.A., Zheng, N.

(2010) Nature 468: 400-405

Released	2010-10-13
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Arabidopsis thaliana
Macromolecule	Coronatine-insensitive protein 1 (protein) JAZ1 incomplete degron peptide (protein) SKP1-like protein 1A (protein)
Unique Ligands	7JA, PO4

Explore in 3D

3OGM \| pdb_00003ogm	Download File View File

Structure of COI1-ASK1 in complex with coronatine and the JAZ1 degron

Sheard, L.B., Tan, X., Mao, H., Withers, J., Ben-Nissan, G., Hinds, T.R., Hsu, F., Sharon, M., Browse, J., He, S.Y., Rizo, J., Howe, G.A., Zheng, N.

(2010) Nature 468: 400-405

Released	2010-10-13
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Arabidopsis thaliana
Macromolecule	Coronatine-insensitive protein 1 (protein) JAZ1 degron peptide (protein) SKP1-like protein 1A (protein)
Unique Ligands	OGK, PO4

Explore in 3D

3V7D \| pdb_00003v7d	Download File View File

Crystal Structure of ScSkp1-ScCdc4-pSic1 peptide complex

Tang, X., Orlicky, S., Mittag, T., Csizmok, V., Pawson, T., Forman-Kay, J., Sicheri, F., Tyers, M.

(2012) Proc Natl Acad Sci U S A 109: 3287-3292

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.306 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Cell division control protein 4 (protein) Protein SIC1 (protein) Suppressor of kinetochore protein 1 (protein)

Explore in 3D

3WSO \| pdb_00003wso	Download File View File

Crystal structure of the Skp1-FBG3 complex

Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.

(2015) PLoS One 10: e0140366-e0140366

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	F-box only protein 44 (protein) S-phase kinase-associated protein 1 (protein)

Explore in 3D

4I6J \| pdb_00004i6j	Download File View File

A ubiquitin ligase-substrate complex

Xing, W., Busino, L., Hinds, T.R., Marionni, S.T., Saifee, N.H., Bush, M.F., Pagano, M., Zheng, N.

(2013) Nature 496: 64-68

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Cryptochrome-2 (protein) F-box/LRR-repeat protein 3 (protein) S-phase kinase-associated protein 1 (protein)

Explore in 3D

5HYW \| pdb_00005hyw	Download File View File

The crystal structure of the D3-ASK1 complex

Yao, R.F., Ming, Z.H., Yan, L.M., Rao, Z.H., Lou, Z.Y., Xie, D.X.

(2016) Nature 536: 469-473

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Arabidopsis thaliana Oryza sativa Japonica Group
Macromolecule	F-box/LRR-repeat MAX2 homolog (protein) SKP1-like protein 1A (protein)

Explore in 3D

5HZG \| pdb_00005hzg	Download File View File

The crystal structure of the strigolactone-induced AtD14-D3-ASK1 complex

Yao, R.F., Ming, Z.H., Yan, L.M., Rao, Z.H., Lou, Z.Y., Xie, D.X.

(2016) Nature 536: 469-473

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Arabidopsis thaliana Oryza sativa Japonica Group
Macromolecule	F-box/LRR-repeat MAX2 homolog (protein) SKP1-like protein 1A (protein) Strigolactone esterase D14 (protein)
Unique Ligands	6OM

Explore in 3D

5IBK \| pdb_00005ibk	Download File View File

Skp1-F-box in complex with a ubiquitin variant

Orlicky, S., Sicheri, F.

(2016) Proc Natl Acad Sci U S A 113: 3527-3532

Released	2016-03-30
Method	X-RAY DIFFRACTION 2.503 Å
Organisms	Homo sapiens
Macromolecule	F-box/WD repeat-containing protein 7 (protein) Polyubiquitin-B (protein) S-phase kinase-associated protein 1,S-phase kinase-associated protein 1 (protein)

Explore in 3D

5JH5 \| pdb_00005jh5	Download File View File

Structural Basis for the Hierarchical Assembly of the Core of PRC1.1

Wong, S.J., Taylor, A.B., Hart, P.J., Kim, C.A.

(2016) Structure 24: 1795-1801

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	BCL-6 corepressor-like protein 1 (protein) Lysine-specific demethylase 2B (protein) Polycomb group RING finger protein 1 (protein) S-phase kinase-associated protein 1 (protein)

1 to 25 of 88 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2ASS | pdb_00002ass

2AST | pdb_00002ast

2OVP | pdb_00002ovp

2OVQ | pdb_00002ovq

2OVR | pdb_00002ovr

2P1M | pdb_00002p1m

2P1N | pdb_00002p1n

2P1O | pdb_00002p1o

2P1P | pdb_00002p1p

2P1Q | pdb_00002p1q

3C6N | pdb_00003c6n

3C6O | pdb_00003c6o

3C6P | pdb_00003c6p

3L2O | pdb_00003l2o

3MKS | pdb_00003mks

3OGK | pdb_00003ogk

3OGL | pdb_00003ogl

3OGM | pdb_00003ogm

3V7D | pdb_00003v7d

3WSO | pdb_00003wso

4I6J | pdb_00004i6j

5HYW | pdb_00005hyw

5HZG | pdb_00005hzg

5IBK | pdb_00005ibk

5JH5 | pdb_00005jh5