RCSB PDB: Search

2MA9 \| pdb_00002ma9	Download File View File

HIV-1 Vif SOCS-box and Elongin BC solution structure

Lu, Z., Bergeron, J.R., Atkinson, R.A., Schaller, T., Veselkov, D.A., Oregioni, A., Yang, Y., Matthews, S.J., Malim, M.H., Sanderson, M.R.

(2013) Open Biol 3: 130100-130100

Released	2013-12-11
Method	SOLUTION NMR
Organisms	Homo sapiens Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Virion infectivity factor (protein)

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4JGH \| pdb_00004jgh	Download File View File

Structure of the SOCS2-Elongin BC complex bound to an N-terminal fragment of Cullin5

Kim, Y.K., Kwak, M.J., Ku, B., Suh, H.Y., Joo, K., Lee, J., Jung, J.U., Oh, B.H.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1587-1597

Released	2013-08-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Cullin-5 (protein) Suppressor of cytokine signaling 2 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein)

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4N9F \| pdb_00004n9f	Download File View File

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex

Guo, Y.Y., Dong, L.Y., Huang, Z.W.

(2014) Nature 505: 229-233

Released	2014-01-08
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Core-binding factor subunit beta (protein) Cullin-5 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Virion infectivity factor (protein)
Unique Ligands	ZN

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4W9C \| pdb_00004w9c	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(oxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 2)

Gadd, M.S., Hewitt, S., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JG

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4W9D \| pdb_00004w9d	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methyloxazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3)

Gadd, M.S., Hewitt, S., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JK

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4W9E \| pdb_00004w9e	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(thiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 4)

Gadd, M.S., Soares, P., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JT

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4W9F \| pdb_00004w9f	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 5)

van Molle, I., Hewitt, S., Galdeano, C., Gadd, M.S., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JU

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4W9G \| pdb_00004w9g	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-(3,3-dimethylbutanoyl)-4-hydroxy-N-(3-methyl-4-(thiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6)

Gadd, M.S., Soares, P., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JV

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4W9H \| pdb_00004w9h	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-acetamido-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 7)

Gadd, M.S., Soares, P., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JF

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4W9I \| pdb_00004w9i	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((2S,4R)-1-acetyl-4-hydroxypyrrolidine-2-carbonyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10)

Gadd, M.S., Soares, P., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JS

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4W9J \| pdb_00004w9j	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-4-methylpentanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 13)

Gadd, M.S., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JH

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4W9K \| pdb_00004w9k	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3-phenylpropanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 14)

Gadd, M.S., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JO

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4W9L \| pdb_00004w9l	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3,3-dimethylbutanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 15)

Gadd, M.S., Galdeano, C., van Molle, I., Ciulli, A.

(2014) J Med Chem 57: 8657-8663

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	3JJ

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4WQO \| pdb_00004wqo	Download File View File

Structure of VHL-EloB-EloC-Cul2

Nguyen, H.C., Xiong, Y.

(2015) Structure 23: 441-449

Released	2015-03-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Cullin-2 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)

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5BO4 \| pdb_00005bo4	Download File View File

Structure of SOCS2:Elongin C:Elongin B from DMSO-treated crystals

Gadd, M.S., Bulatov, E., Ciulli, A.

(2015) PLoS One 10: e0131218-e0131218

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Suppressor of cytokine signaling 2 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein)

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5LLI \| pdb_00005lli	Download File View File

pVHL:EloB:EloC in complex with VH298

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2016) Nat Commun 7: 13312-13312

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	6Z3

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5N4W \| pdb_00005n4w	Download File View File

Crystal structure of the Cul2-Rbx1-EloBC-VHL ubiquitin ligase complex

Cardote, T.A.F., Gadd, M.S., Ciulli, A.

(2017) Structure 25: 901-911.e3

Released	2017-06-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Homo sapiens
Macromolecule	Cullin-2 (protein) E3 ubiquitin-protein ligase RBX1 (protein) Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	ZN

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5NVV \| pdb_00005nvv	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-4-hydroxy-1-((S)-2-(2-hydroxyacetamido)-3,3-dimethylbutanoyl)-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 3)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BT

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5NVW \| pdb_00005nvw	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BW

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5NVX \| pdb_00005nvx	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-fluorocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 10)

Gadd, M.S., Soares, P., Galdeano, C., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	4YY

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5NVY \| pdb_00005nvy	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-acetamidopropanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl) pyrrolidine-2-carboxamide (ligand 11)

Soares, P., Gadd, M.S., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9B5

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5NVZ \| pdb_00005nvz	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetylcyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 16)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BN

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5NW0 \| pdb_00005nw0	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetamidocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 17)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BK

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5NW1 \| pdb_00005nw1	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclobutanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 18)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9BH

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5NW2 \| pdb_00005nw2	Download File View File

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-3,3-dimethyl-2-(oxetane-3-carboxamido)butanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 19)

Gadd, M.S., Soares, P., Ciulli, A.

(2018) J Med Chem 61: 599-618

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Elongin-B (protein) Elongin-C (protein) Von Hippel-Lindau disease tumor suppressor (protein)
Unique Ligands	9B8

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2MA9 | pdb_00002ma9

4JGH | pdb_00004jgh

4N9F | pdb_00004n9f

4W9C | pdb_00004w9c

4W9D | pdb_00004w9d

4W9E | pdb_00004w9e

4W9F | pdb_00004w9f

4W9G | pdb_00004w9g

4W9H | pdb_00004w9h

4W9I | pdb_00004w9i

4W9J | pdb_00004w9j

4W9K | pdb_00004w9k

4W9L | pdb_00004w9l

4WQO | pdb_00004wqo

5BO4 | pdb_00005bo4

5LLI | pdb_00005lli

5N4W | pdb_00005n4w

5NVV | pdb_00005nvv

5NVW | pdb_00005nvw

5NVX | pdb_00005nvx

5NVY | pdb_00005nvy

5NVZ | pdb_00005nvz

5NW0 | pdb_00005nw0

5NW1 | pdb_00005nw1

5NW2 | pdb_00005nw2