RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "TRX5"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (13)
	synthetic construct (2)
	Xenopus laevis (1)
	Xenopus tropicalis (1)

Taxonomy

	Eukaryota (13)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (13)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (10)

Enzyme Classification Name

Transferases (13)

Symmetry Type

	Asymmetric (10)
	Dihedral (2)
	Cyclic (1)

SCOP Classification

Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 13 of 13 Structures

Page 1 of 1

Sort by

Explore in 3D

5LSU \| pdb_00005lsu	Download File View File

Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives

Tisi, D., Pathuri, P., Heightman, T.

(2016) ACS Chem Biol 11: 3093-3105

Released	2016-10-05
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	SAM, ZN

Explore in 3D

5VC8 \| pdb_00005vc8	Download File View File

Crystal structure of the WHSC1 PWWP1 domain

Qin, S., Tempel, W., Dong, A., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2021) Biochem Biophys Res Commun 569: 199-206

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein) DNA (5'-D(PCPTP*(DN))-3') (nucleic acid) dodeca-2-deoxy-nucleotide, poorly resolved by electron density (nucleic acid)
Unique Ligands	UNX

Explore in 3D

6UE6 \| pdb_00006ue6	Download File View File

PWWP1 domain of NSD2 in complex with MR837

Liu, Y., Tempel, W., De Freitas, R.F., Schapira, M., Brown, P.J., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)

(2021) J Med Chem 64: 1584-1592

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	Q5D, UNX

Explore in 3D

6XCG \| pdb_00006xcg	Download File View File

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound UNC6934

Zhou, M.Q., Dong, A., Ingerman, L.A., Hanley, R.P., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2022) Nat Chem Biol 18: 56-63

Released	2020-07-22
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	UNX, V01

Explore in 3D

7CRO \| pdb_00007cro	Download File View File

NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP

Li, W., Tian, W., Yuan, G., Deng, P., Gozani, O., Patel, D., Wang, Z.

(2021) Nature 590: 498-503

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.75 Å
Organisms	Homo sapiens Xenopus laevis Xenopus tropicalis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SAM, ZN

Explore in 3D

7E8D \| pdb_00007e8d	Download File View File

NSD2 E1099K mutant bound to nucleosome

Sengoku, T., Sato, K., Nishizawa, T., Nureki, O., Ogata, K.

(2021) Nat Commun 12: 6605-6605

Released	2021-11-10
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SFG, ZN

Explore in 3D

7LMT \| pdb_00007lmt	Download File View File

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a

Lei, M., Freitas, R.F., Dong, A., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

To be published

Released	2021-03-10
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	UNX, Y6V

Explore in 3D

7MDN \| pdb_00007mdn	Download File View File

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a

Lei, M., Freitas, R.F., Dong, A., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2022) Nat Chem Biol 18: 56-63

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	UNX, Y6V

Explore in 3D

7VLN \| pdb_00007vln	Download File View File

NSD2-PWWP1 domain bound with an imidazol-5-yl benzonitrile compound

Cao, D.Y., Li, Y.L., Li, J., Xiong, B.

(2022) J Med Chem 65: 9459-9477

Released	2022-07-06
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	7QC

Explore in 3D

9EXW \| pdb_00009exw	Download File View File

Crystal structure of the PWWP1 domain of NSD2 bound by compound 17.

Collie, G.W.

(2024) J Med Chem 67: 8962-8987

Released	2024-05-29
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	A1H7X, EDO

Explore in 3D

9EXX \| pdb_00009exx	Download File View File

Crystal structure of the PWWP1 domain of NSD2 bound by compound 18.

Collie, G.W.

(2024) J Med Chem 67: 8962-8987

Released	2024-05-29
Method	X-RAY DIFFRACTION 1.943 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	A1H7Y, EDO, EOH

Explore in 3D

9EXY \| pdb_00009exy	Download File View File

Crystal structure of the PWWP1 domain of NSD2 bound by compound 34.

Collie, G.W.

(2024) J Med Chem 67: 8962-8987

Released	2024-05-29
Method	X-RAY DIFFRACTION 1.699 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	A1H7Z

Explore in 3D

9GBF \| pdb_00009gbf	Download File View File

X-RAY structure of PHDvC5HCH tandem domain of NSD2

Musco, G., Cocomazzi, P., Berardi, A., Knapp, S., Kramer, A.

(2025) Nucleic Acids Res 53:

Released	2024-12-18
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD2 (protein)
Unique Ligands	EPE, NA, PEG, ZN

1 to 13 of 13 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5LSU | pdb_00005lsu

Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives

5VC8 | pdb_00005vc8

Crystal structure of the WHSC1 PWWP1 domain

6UE6 | pdb_00006ue6

PWWP1 domain of NSD2 in complex with MR837

6XCG | pdb_00006xcg

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound UNC6934

7CRO | pdb_00007cro

NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP

7E8D | pdb_00007e8d

NSD2 E1099K mutant bound to nucleosome

7LMT | pdb_00007lmt

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a

7MDN | pdb_00007mdn

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound MRT10241866a

7VLN | pdb_00007vln

NSD2-PWWP1 domain bound with an imidazol-5-yl benzonitrile compound

9EXW | pdb_00009exw

Crystal structure of the PWWP1 domain of NSD2 bound by compound 17.

9EXX | pdb_00009exx

Crystal structure of the PWWP1 domain of NSD2 bound by compound 18.

9EXY | pdb_00009exy

Crystal structure of the PWWP1 domain of NSD2 bound by compound 34.

9GBF | pdb_00009gbf

X-RAY structure of PHDvC5HCH tandem domain of NSD2

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5LSU | pdb_00005lsu

5VC8 | pdb_00005vc8

6UE6 | pdb_00006ue6

6XCG | pdb_00006xcg

7CRO | pdb_00007cro

7E8D | pdb_00007e8d

7LMT | pdb_00007lmt

7MDN | pdb_00007mdn

7VLN | pdb_00007vln

9EXW | pdb_00009exw

9EXX | pdb_00009exx

9EXY | pdb_00009exy

9GBF | pdb_00009gbf