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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "YTA2"

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (16)
	Homo sapiens (12)
	Saccharomyces cerevisiae (2)

Taxonomy

Eukaryota (18)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (12)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (15)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (1)

Symmetry Type

	Cyclic (13)
	Asymmetric (5)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Artifacts (12)

AllSelected

1 to 18 of 18 Structures

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2GPL \| pdb_00002gpl	Download File View File

TMC-95 based biphenyl-ether macrocycles: specific proteasome inhibitors

Groll, M., Goetz, M., Kaiser, M., Weyher, E., Moroder, M.

(2006) Chem Biol 13: 607-614

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 14
Unique Ligands	BIQ

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4G4S \| pdb_00004g4s	Download File View File

Structure of Proteasome-Pba1-Pba2 Complex

Kish-Trier, E., Robinson, H., Stadtmueller, B.M., Hill, C.P.

(2012) J Biological Chem 287: 37371-37382

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 16
Unique Ligands	LDZ, MG

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5L52 \| pdb_00005l52	Download File View File

Yeast 20S proteasome in complex with epoxyketone inhibitor 14

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	6N5, CL, MES, MG

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5L54 \| pdb_00005l54	Download File View File

Yeast 20S proteasome in complex with epoxyketone inhibitor 16

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	79P, CL, MES, MG

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5L55 \| pdb_00005l55	Download File View File

Yeast 20S proteasome in complex with epoxyketone inhibitor 18

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	6NV, CL, MES, MG

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5L5A \| pdb_00005l5a	Download File View File

Yeast 20S proteasome with human beta5i (1-138; R57T)

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

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5L5B \| pdb_00005l5b	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133)

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

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5L5D \| pdb_00005l5d	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with ONX 0914

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	04C, CL, MES, MG

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5L5E \| pdb_00005l5e	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with carfilzomib

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	3BV, CL, MES, MG

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5L5F \| pdb_00005l5f	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with bortezomib

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	BO2, CL, MG

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5L5H \| pdb_00005l5h	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with PR-924

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	39V, CL, MES, MG

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5L5I \| pdb_00005l5i	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with epoxyketone inhibitor 9

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	38X, CL, MES, MG

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5L5J \| pdb_00005l5j	Download File View File

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with epoxyketone inhibitor 14

Groll, M., Huber, E.M.

(2016) EMBO J 35: 2602-2613

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	6N5, CL, MES, MG

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6EF0 \| pdb_00006ef0	Download File View File

Yeast 26S proteasome bound to ubiquitinated substrate (1D* motor state)

de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4.43 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	ADP, ATP

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6EF1 \| pdb_00006ef1	Download File View File

Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)

de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4.73 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	ADP, ATP

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6EF2 \| pdb_00006ef2	Download File View File

Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)

de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	ADP, ATP

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6EF3 \| pdb_00006ef3	Download File View File

Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)

de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4.17 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 24
Unique Ligands	ADP, ATP

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9D0T \| pdb_00009d0t	Download File View File

Core particle assembly intermediate 1 purified from Saccharomyces cerevisiae

Chen, X., Kaur, M., Roelofs, J., Walters, K.J.

(2024) bioRxiv

Released	2024-12-04
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 12

1 to 18 of 18 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2GPL | pdb_00002gpl

TMC-95 based biphenyl-ether macrocycles: specific proteasome inhibitors

4G4S | pdb_00004g4s

Structure of Proteasome-Pba1-Pba2 Complex

5L52 | pdb_00005l52

Yeast 20S proteasome in complex with epoxyketone inhibitor 14

5L54 | pdb_00005l54

Yeast 20S proteasome in complex with epoxyketone inhibitor 16

5L55 | pdb_00005l55

Yeast 20S proteasome in complex with epoxyketone inhibitor 18

5L5A | pdb_00005l5a

Yeast 20S proteasome with human beta5i (1-138; R57T)

5L5B | pdb_00005l5b

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133)

5L5D | pdb_00005l5d

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with ONX 0914

5L5E | pdb_00005l5e

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with carfilzomib

5L5F | pdb_00005l5f

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with bortezomib

5L5H | pdb_00005l5h

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with PR-924

5L5I | pdb_00005l5i

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with epoxyketone inhibitor 9

5L5J | pdb_00005l5j

Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133) in complex with epoxyketone inhibitor 14

6EF0 | pdb_00006ef0

Yeast 26S proteasome bound to ubiquitinated substrate (1D* motor state)

6EF1 | pdb_00006ef1

Yeast 26S proteasome bound to ubiquitinated substrate (5D motor state)

6EF2 | pdb_00006ef2

Yeast 26S proteasome bound to ubiquitinated substrate (5T motor state)

6EF3 | pdb_00006ef3

Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)

9D0T | pdb_00009d0t

Core particle assembly intermediate 1 purified from Saccharomyces cerevisiae

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2GPL | pdb_00002gpl

4G4S | pdb_00004g4s

5L52 | pdb_00005l52

5L54 | pdb_00005l54

5L55 | pdb_00005l55

5L5A | pdb_00005l5a

5L5B | pdb_00005l5b

5L5D | pdb_00005l5d

5L5E | pdb_00005l5e

5L5F | pdb_00005l5f

5L5H | pdb_00005l5h

5L5I | pdb_00005l5i

5L5J | pdb_00005l5j

6EF0 | pdb_00006ef0

6EF1 | pdb_00006ef1

6EF2 | pdb_00006ef2

6EF3 | pdb_00006ef3

9D0T | pdb_00009d0t