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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "cypA"

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Search Summary

This query matches 145 Structures.

Refinements

Structure Determination Methodology

experimental (145)

Scientific Name of Source Organism

	Homo sapiens (142)
	Human immunodeficiency virus 1 (7)
	synthetic construct (5)
	Tolypocladium inflatum (3)
	Zobellia galactanivorans (2)
	Chlorocebus aethiops (1)
	Lama glama (1)
	Visna-maedi virus (1)

Taxonomy

	Eukaryota (143)
	Riboviria (8)
	other sequences (5)
	Bacteria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (133)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (4)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

Protein (145)

Refinement Resolution (Å)

	1.0 - 1.5 (45)
	1.5 - 2.0 (75)
	2.0 - 2.5 (11)
	2.5 - 3.0 (2)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (4)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (2)
	2015 - 2019 (68)
	2020 - 2024 (49)
	2025 - 2029 (17)

Enzyme Classification Name

	Isomerases (143)
	Hydrolases (42)
	Transferases (5)
	Oxidoreductases (2)

Membrane Protein Annotation

mpstruc (1)

Symmetry Type

	Asymmetric (136)
	Cyclic (9)

SCOP Classification

	All beta proteins (88)
	Artifacts (5)

AllSelected

1 to 25 of 145 Structures

Page 1 of 6

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1YND \| pdb_00001ynd	Download File View File

Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6A resolution

Kallen, J., Sedrani, R., Zenke, G., Wagner, J.

(2005) J Biological Chem 280: 21965-21971

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	SFA

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1ZKF \| pdb_00001zkf	Download File View File

Cyrstal Structure of Human Cyclophilin-A in Complex with suc-AGPF-pNA

Eisenmesser, E.Z., Thai, V., Pozharski, E., Kern, D.

To be published

Released	2006-04-11
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein) Suc-ALA-GLY-PRO-PHE-pNA (protein)

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2ALF \| pdb_00002alf	Download File View File

crystal structure of human CypA mutant K131A

Hu, H., Huang, C.-Q., Liu, H.-L., Han, Y., Chen, M.-E., Yu, L., Bi, R.-C.

To be published

Released	2005-08-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	MG

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2MS4 \| pdb_00002ms4	Download File View File

Cyclophilin a complexed with a fragment of crk-ii

Jankowski, W., Saleh, T., Rossi, P., Kalodimos, C.

(2016) Nat Chem Biol 12: 117-123

Released	2015-09-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptide (protein) Peptidyl-prolyl cis-trans isomerase A (protein)

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2MZU \| pdb_00002mzu	Download File View File

Extending the eNOE data set of large proteins by evaluation of NOEs with unresolved diagonals

Chi, C.N., Strotz, D., Riek, R., Voegeli, B.

(2015) J Biomol NMR 62: 63-69

Released	2015-04-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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2N0T \| pdb_00002n0t	Download File View File

Structural ensemble of the enzyme cyclophilin reveals an orchestrated mode of action at atomic resolution

Chi, C.N., Voegeli, B., Bibow, S., Strotz, D., Orts, J., Guntert, P., Riek, R.

(2015) Angew Chem Int Ed Engl 54: 11657-11661

Released	2015-08-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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3K0M \| pdb_00003k0m	Download File View File

Cryogenic structure of CypA

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0N \| pdb_00003k0n	Download File View File

Room temperature structure of CypA

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.391 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0O \| pdb_00003k0o	Download File View File

Room temperature structure of CypA mutant Ser99Thr

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0P \| pdb_00003k0p	Download File View File

Cryogenic structure of CypA mutant Ser99Thr

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 1.649 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0Q \| pdb_00003k0q	Download File View File

Cryogenic structure of CypA mutant Ser99Thr (2)

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.317 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3K0R \| pdb_00003k0r	Download File View File

Cryogenic structure of CypA mutant Arg55Lys

Fraser, J.S., Alber, T.

(2009) Nature 462: 669-673

Released	2009-12-08
Method	X-RAY DIFFRACTION 2.424 Å
Organisms	Homo sapiens
Macromolecule	Cyclophilin A (protein)

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3RDD \| pdb_00003rdd	Download File View File

Human Cyclophilin A Complexed with an Inhibitor

Colliandre, L., Ahmed-Belkacem, H., Bessin, Y., Pawlotsky, J.M., Guichou, J.F.

(2016) Nat Commun 7: 12777-12777

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	EA4

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4IPZ \| pdb_00004ipz	Download File View File

SmBz bound to Cyclophilin A

Price, A.J., Jacques, D.A., James, L.C.

(2013) Nature 503: 402-405

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein) cyclosporine SmBz-CsA (protein)
Unique Ligands	CL

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4N1M \| pdb_00004n1m	Download File View File

Structure of Cyclophilin A in complex with GlyPro.

Mcnae, I.W., Patterson, A., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	GLY, PRO

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4N1N \| pdb_00004n1n	Download File View File

Structure of Cyclophilin A in complex with Benzamide.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	UNU

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4N1O \| pdb_00004n1o	Download File View File

Structure of Cyclophilin A in complex with Saccharin.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	LSA

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4N1P \| pdb_00004n1p	Download File View File

Structure of Cyclophilin A in complex with Picolinamide.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	WM1

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4N1Q \| pdb_00004n1q	Download File View File

Structure of Cyclophilin A in complex with cyclohexanecarboxamide.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	WM2

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4N1R \| pdb_00004n1r	Download File View File

Structure of Cyclophilin A in complex with benzenesulfonohydrazide.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	WM3

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4N1S \| pdb_00004n1s	Download File View File

Structure of Cyclophilin A in complex with benzohydrazide.

Mcnae, I.W., Dornan, J., Walkinshaw, M.D.

To be published

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	WM4

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4YUG \| pdb_00004yug	Download File View File

Multiconformer synchrotron model of CypA at 100 K

Keedy, D.A., Kenner, L.R., Warkentin, M., Woldeyes, R.A., Thompson, M.C., Brewster, A.S., Van Benschoten, A.H., Baxter, E.L., Hopkins, J.B., Uervirojnangkoorn, M., McPhillips, S.E., Song, J., Mori, R.A., Holton, J.M., Weis, W.I., Brunger, A.T., Soltis, M., Lemke, H., Gonzalez, A., Sauter, N.K., Cohen, A.E., van den Bedem, H., Thorne, R.E., Fraser, J.S.

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUH \| pdb_00004yuh	Download File View File

Multiconformer synchrotron model of CypA at 150 K

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUI \| pdb_00004yui	Download File View File

Multiconformer synchrotron model of CypA at 180 K

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

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4YUJ \| pdb_00004yuj	Download File View File

Multiconformer synchrotron model of CypA at 240 K

(2015) Elife 4:

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)

1 to 25 of 145 Structures

Page 1 of 6

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YND | pdb_00001ynd

1ZKF | pdb_00001zkf

2ALF | pdb_00002alf

2MS4 | pdb_00002ms4

2MZU | pdb_00002mzu

2N0T | pdb_00002n0t

3K0M | pdb_00003k0m

3K0N | pdb_00003k0n

3K0O | pdb_00003k0o

3K0P | pdb_00003k0p

3K0Q | pdb_00003k0q

3K0R | pdb_00003k0r

3RDD | pdb_00003rdd

4IPZ | pdb_00004ipz

4N1M | pdb_00004n1m

4N1N | pdb_00004n1n

4N1O | pdb_00004n1o

4N1P | pdb_00004n1p

4N1Q | pdb_00004n1q

4N1R | pdb_00004n1r

4N1S | pdb_00004n1s

4YUG | pdb_00004yug

4YUH | pdb_00004yuh

4YUI | pdb_00004yui

4YUJ | pdb_00004yuj