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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Bifidobacterium animalis subsp. lactis Bl-04"

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

Bifidobacterium animalis subsp. lactis Bl-04 (11)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (4)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (8)
	Cyclic (3)

SCOP Classification

Alpha and beta proteins (a/b) (4)

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1 to 11 of 11 Structures

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3ZKK	Download File View File

Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with xylotetraose

Ejby, M., Vujicic-Zagar, A., Fredslund, F., Svensson, B., Slotboom, D.J., Abou Hachem, M.

(2013) Mol Microbiol 90: 1100

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.198 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	XOS BINDING PROTEIN (protein)
Unique Ligands	P33
Unique branched monosaccharides	XYP

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3ZKL	Download File View File

Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with xylotriose

Ejby, M., Vujicic-Zagar, A., Fredslund, F., Svensson, B., Slotboom, D.J., Abou Hachem, M.

(2013) Mol Microbiol 90: 1100

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	PUTATIVE SUGAR TRANSPORTER SOLUTE-BINDING PROTEIN (protein)
Unique Ligands	1PE
Unique branched monosaccharides	XYP

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4C1T	Download File View File

Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with arabinoxylotriose

Fredslund, F., Ejby, M., Vujicic-Zagar, A., Svensson, B., Slotboom, D.J., Abou Hachem, M.

(2013) Mol Microbiol 90: 1100

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	SUGAR TRANSPORTER SOLUTE-BINDING PROTEIN (protein)
Unique Ligands	1PE
Unique branched monosaccharides	AHR, XYP

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4C1U	Download File View File

Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with arabinoxylobiose

Fredslund, F., Ejby, M., Vujicic-Zagar, A., Svensson, B., Slotboom, D.J., Abou Hachem, M.

(2013) Mol Microbiol 90: 1100

Released	2013-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	SUGAR TRANSPORTER SOLUTE-BINDING PROTEIN (protein)
Unique Ligands	1PE
Unique branched monosaccharides	AHR, XYP

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4UNI	Download File View File

beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose

Viborg, A.H., Fredslund, F., Katayama, T., Nielsen, S.K., Svensson, B., Kitaoka, M., Lo Leggio, L., Abou Hachem, M.

(2014) Mol Microbiol

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	GAL, GOL, PEG, PGE, ZN

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4UOQ	Download File View File

Nucleophile mutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04

Viborg, A.H., Fredslund, F., Katayama, T., Nielsen, S.K., Svensson, B., Kitaoka, M., Lo Leggio, L., Abou Hachem, M.

(2014) Mol Microbiol

Released	2014-10-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	PEG, PG4, PGE, ZN

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4UOZ	Download File View File

beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose

Viborg, A.H., Fredslund, F., Katayama, T., Nielsen, S.K., Svensson, B., Kitaoka, M., Lo Leggio, L., Abou Hachem, M.

(2014) Mol Microbiol

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	BETA-GALACTOSIDASE (protein)
Unique Ligands	GLA, PGE, ZN

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4ZS9	Download File View File

Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with raffinose

Fredslund, F., Ejby, M., Andersen, J.M., Slotboom, D.J., Abou Hachem, M.

(2016) J Biological Chem 291: 20220-20231

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	Sugar binding protein of ABC transporter system (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	FRU, GLA, GLC

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4ZZA	Download File View File

Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with raffinose, selenomethionine derivative

Fredslund, F., Ejby, M., Andersen, J.M., Slotboom, D.J., Abou Hachem, M.

(2016) J Biological Chem 291: 20220-20231

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	Sugar binding protein of ABC transporter system (protein)
Unique branched monosaccharides	FRU, GLA, GLC

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4ZZE	Download File View File

Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with panose

Fredslund, F., Ejby, M., Andersen, J.M., Slotboom, D.J., Hachem, M.A.

(2016) J Biological Chem 291: 20220-20231

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	Sugar binding protein of ABC transporter system (protein)
Unique Ligands	CL, MG
Unique branched monosaccharides	GLC

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6H0H	Download File View File

The ABC transporter associated binding protein from B. animalis subsp. lactis Bl-04 in complex with beta-1,6-galactobiose

Fredslund, F., Lo Leggio, L.

(2019) J Biological Chem 294: 11701-11711

Released	2019-06-19
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Bifidobacterium animalis subsp. lactis Bl-04
Macromolecule	Probable solute binding protein of ABC transporter system for sugars (protein)
Unique Ligands	GAL, GLA, PEG, PG4
Unique branched monosaccharides	GAL