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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Corynebacterium pseudotuberculosis C231"

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Search Summary

This query matches 44 Structures.

Refinements

Structure Determination Methodology

experimental (44)

Scientific Name of Source Organism

	Photorhabdus laumondii subsp. laumondii TTO1 (44)
	Photorhabdus luminescens (2)
	Aeromonas hydrophila (1)
	Homo sapiens (1)
	Tequatrovirus T4 (1)

Taxonomy

	Bacteria (44)
	Duplodnaviria (1)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (43)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (44)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (23)
	2.0 - 2.5 (13)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (6)
	2020 - 2024 (29)
	2025 - 2029 (5)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Cyclic (31)
	Asymmetric (12)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (1)

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1 to 25 of 44 Structures

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4FBJ \| pdb_00004fbj	Download File View File

Structure of the Cif:Nedd8 complex - Photorhabdus luminescens Cycle Inhibiting Factor in complex with human Nedd8

Crow, A., Banfield, M.J.

(2012) Proc Natl Acad Sci U S A

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Hypothetical protein (protein) NEDD8 (protein)
Unique Ligands	CL

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4HB9 \| pdb_00004hb9	Download File View File

Crystal structure of a putative FAD containing monooxygenase from Photorhabdus luminescens subsp. laumondii TTO1 (Target PSI-012791)

Sampathkumar, P., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

(2017) J Biological Chem 292: 6680-6694

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Similarities with probable monooxygenase (protein)
Unique Ligands	EDO, FAD

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4MV2 \| pdb_00004mv2	Download File View File

Crystal structure of plu4264 protein from Photorhabdus luminescens

Michalska, K., Li, H., Jedrzejczak, R., Babnigg, G., Bingman, C.A., Yennamalli, R., Weerth, S., Thomas, M.G., Phillips Jr., G.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)

(2015) Proteins 83: 383-388

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	plu4264 (protein)
Unique Ligands	NA, NI

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4Q29 \| pdb_00004q29	Download File View File

Ensemble Refinement of plu4264 protein from Photorhabdus luminescens

Wang, F., Michalska, K., Li, H., Jedrzejczak, R., Babnigg, G., Bingman, C.A., Yennamalli, R., Weerth, S., Miller, M.D., Thomas, M.G., Joachimiak, A., Phillips Jr., G.N., Enzyme Discovery for Natural Product Biosynthesis (NatPro), Midwest Center for Structural Genomics (MCSG)

(2015) Proteins 83: 383-388

Released	2014-05-07
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	plu4264 protein (protein)
Unique Ligands	NA, NI

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5GK0 \| pdb_00005gk0	Download File View File

Crystal structure of selnomethionin-labeled ketosynthase StlD

Mori, T., Saito, Y., Morita, H., Abe, I.

(2016) Cell Chem Biol 23: 1468-1479

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.331 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Ketosynthase StlD (protein)

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5GK1 \| pdb_00005gk1	Download File View File

Crystal structure of the ketosynthase StlD complexed with substrate

Mori, T., Saito, Y., Morita, H., Abe, I.

(2016) Cell Chem Biol 23: 1468-1479

Released	2017-07-05
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Ketosynthase StlD (protein)
Unique Ligands	2K3

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5GK2 \| pdb_00005gk2	Download File View File

The structure of the H302A mutant of StlD

Mori, T., Dngfeng, Y., Morita, H., Abe, I.

(2016) Cell Chem Biol 23: 1468-1479

Released	2017-07-05
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Ketosynthase StlD (protein)

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5OFX \| pdb_00005ofx	Download File View File

Plla lectin, trisaccharide complex

Koehnke, J., Sikandar, A.

(2017) J Biological Chem 292: 19935-19951

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	PllA (protein)
Unique Ligands	CA
Unique branched monosaccharides	FRU, GLA, GLC

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5OFZ \| pdb_00005ofz	Download File View File

PllA lectin, apo

Koehnke, J., Sikandar, A.

(2017) J Biological Chem 292: 19935-19951

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Uncharacterized protein (protein)

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6P22 \| pdb_00006p22	Download File View File

Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC

Buth, S.A., Shneider, M.M., Leiman, P.G.

To be published

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.291 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1 Tequatrovirus T4
Macromolecule	CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC (protein) PAAR-REPEAT CENTRAL SPIKE TIP PROTEIN (protein)
Unique Ligands	ELA, MG, PLM, STE

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6RFZ \| pdb_00006rfz	Download File View File

Photorhabdus laumondii lectin PLL2 in complex with D-glucose

Houser, J., Fujdiarova, E., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	lectin PLL2 from Photorhabdus laumondii (protein)
Unique Ligands	ACT, BGC, EDO, NA

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6RG1 \| pdb_00006rg1	Download File View File

Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose

Houser, J., Fujdiarova, E., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	lectin PLL2 from Photorhabdus laumondii (protein)
Unique Ligands	ACT, EDO, NA, RM4

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6RG2 \| pdb_00006rg2	Download File View File

Photorhabdus laumondii lectin PLL2 in complex with 3-O-methyl-D-glucose

Houser, J., Fujdiarova, E., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	lectin PLL2 from Photorhabdus laumondii (protein)
Unique Ligands	3MG, ACT, NA, ZB1

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6RGG \| pdb_00006rgg	Download File View File

Photorhabdus laumondii lectin PLL2 in complex with O-methylated PGL-1-derived disaccharide

Houser, J., Fujdiarova, E., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	lectin PLL2 from Photorhabdus laumondii (protein)
Unique Ligands	7CV, EDO, K3Q, NA

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6SMO \| pdb_00006smo	Download File View File

AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide

Braeuer, A., Zhou, Q., Grammbitter, G.L.C., Schmalhofer, M., Ruehl, M., Kaila, V.R.I., Bode, H., Groll, M.

(2020) Nat Chem 12: 755-763

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1 Photorhabdus luminescens
Macromolecule	Acyl carrier protein (protein) Ketoacyl_synth_N domain-containing protein (protein) PKS_KS domain-containing protein (protein)
Unique Ligands	LKZ, NA, SO4

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6SMP \| pdb_00006smp	Download File View File

AntDE:AntF (holo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide

Braeuer, A., Zhou, Q., Grammbitter, G.L.C., Schmalhofer, M., Ruehl, M., Kaila, V.R.I., Bode, H., Groll, M.

(2020) Nat Chem 12: 755-763

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1 Photorhabdus luminescens
Macromolecule	Acyl carrier protein (protein) Ketoacyl_synth_N domain-containing protein (protein) PKS_KS domain-containing protein (protein)
Unique Ligands	LLE

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6T5Z \| pdb_00006t5z	Download File View File

Crystal structure of an AA10 LPMO from Photorhabdus luminescens

Munzone, A., El Kerdi, B., Reglier, M., Royant, A., Simaan, A.J., Decroos, C.

(2020) FEBS J 287: 3298-3314

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.6000030918 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Chitin-binding type-4 domain-containing protein (protein)
Unique Ligands	CU

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6T96 \| pdb_00006t96	Download File View File

Photorhabdus laumondii subsp. laumondii lectin PLL3

Melicher, F., Houser, J., Fujdiarova, E., Faltinek, L., Wimmerova, M.

(2019) Molecules 24:

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Lectin PLL3 (protein)
Unique Ligands	NA

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7PQ5 \| pdb_00007pq5	Download File View File

Photorhabdus laumondii T6SS-associated Rhs protein carrying the Tre23 toxin domain

Jurenas, D., Talachia Rosa, L., Rey, M., Chamot-Rooke, J., Fronzes, R., Cascales, E.

(2021) Nat Commun 12: 6998-6998

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Tre23 (protein)

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8ARC \| pdb_00008arc	Download File View File

Heterologous Complex of Aeromonas hydrophila Type III secretion substrate AscX with Photorhabdus luminescens subsp. laumondii LscY

Gilzer, D., Niemann, H.H.

(2023) Acta Crystallogr D Struct Biol 79: 508-517

Released	2023-04-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aeromonas hydrophila Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	AscX (protein) Type III secretion protein SctY (protein)
Unique Ligands	BR

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8BGT \| pdb_00008bgt	Download File View File

O-Methyltransferase Plu4890 in complex with SAM

Huber, E.M., Groll, M.

(2023) Structure 31: 573

Released	2023-03-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Methyltransferase Plu4890 (protein)
Unique Ligands	GOL, SAM, TRP

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8BGX \| pdb_00008bgx	Download File View File

O-Methyltransferase Plu4890 in complex with SAH and AQ-270a

Huber, E.M., Groll, M.

(2023) Structure 31: 573

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Methyltransferase Plu4890 (protein)
Unique Ligands	CL, GOL, NA, QPF, SAH

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8BGY \| pdb_00008bgy	Download File View File

O-Methyltransferase Plu4890 in complex with SAH and AQ-284a

Huber, E.M., Groll, M.

(2023) Structure 31: 573

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Methyltransferase Plu4890 (protein)
Unique Ligands	CL, NA, QP3, SAH

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8BGZ \| pdb_00008bgz	Download File View File

O-Methyltransferase Plu4890 (mutant H229N) in complex with SAH and AQ-256

Huber, E.M., Groll, M.

(2023) Structure 31: 573

Released	2023-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	methyltransferase Plu4890 H229N mutant (protein)
Unique Ligands	GOL, NA, QOI, SAH

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8BH0 \| pdb_00008bh0	Download File View File

O-Methyltransferase Plu4890 in complex with SAH and AQ-270b

Huber, E.M., Groll, M.

(2023) Structure 31: 573

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Methyltransferase Plu4890 (protein)
Unique Ligands	CL, NA, QPO, SAH

1 to 25 of 44 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4FBJ | pdb_00004fbj

4HB9 | pdb_00004hb9

4MV2 | pdb_00004mv2

4Q29 | pdb_00004q29

5GK0 | pdb_00005gk0

5GK1 | pdb_00005gk1

5GK2 | pdb_00005gk2

5OFX | pdb_00005ofx

5OFZ | pdb_00005ofz

6P22 | pdb_00006p22

6RFZ | pdb_00006rfz

6RG1 | pdb_00006rg1

6RG2 | pdb_00006rg2

6RGG | pdb_00006rgg

6SMO | pdb_00006smo

6SMP | pdb_00006smp

6T5Z | pdb_00006t5z

6T96 | pdb_00006t96

7PQ5 | pdb_00007pq5

8ARC | pdb_00008arc

8BGT | pdb_00008bgt

8BGX | pdb_00008bgx

8BGY | pdb_00008bgy

8BGZ | pdb_00008bgz

8BH0 | pdb_00008bh0