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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Methylorubrum extorquens AM1"

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Search Summary

This query matches 60 Structures.

Refinements

Structure Determination Methodology

experimental (60)

Scientific Name of Source Organism

	Escherichia coli K-12 (10)
	Homo sapiens (9)
	Pleurotus ostreatus (9)
	Escherichia coli (6)
	Gelatoporia subvermispora (5)
	Pleurotus eryngii (5)
	Escherichia coli str. K-12 substr. W3110 (3)
	Dioscoreophyllum cumminsii (2)
	Enterococcus faecium (2)
	Mus musculus (2)

More...

Taxonomy

	Eukaryota (33)
	Bacteria (25)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (52)
	SOLUTION NMR (5)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (60)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (17)
	2.0 - 2.5 (14)
	2.5 - 3.0 (4)
	3.0 - 3.5 (7)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (8)
	2005 - 2009 (8)
	2010 - 2014 (14)
	2015 - 2019 (9)
	2020 - 2024 (11)

Enzyme Classification Name

	Oxidoreductases (20)
	Hydrolases (11)
	Transferases (6)
	Isomerases (6)
	Lyases (5)
	Ligases (1)

Symmetry Type

	Asymmetric (50)
	Cyclic (10)
	Dihedral (3)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All alpha proteins (21)
	All beta proteins (11)
	Alpha and beta proteins (a/b) (10)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (6)
	Coiled coil proteins (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 60 Structures

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1A4Y \| pdb_00001a4y	Download File View File

RIBONUCLEASE INHIBITOR-ANGIOGENIN COMPLEX

Papageorgiou, A.C., Acharya, K.R.

(1997) EMBO J 16: 5162-5177

Released	1998-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ANGIOGENIN (protein) RIBONUCLEASE INHIBITOR (protein)

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1A53 \| pdb_00001a53	Download File View File

COMPLEX OF INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS WITH INDOLE-3-GLYCEROLPHOSPHATE AT 2.0 A RESOLUTION

Hennig, M., Darimont, B., Kirschner, K., Jansonius, J.N.

(2002) J Mol Biology 319: 757-766

Released	1999-03-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE (protein)
Unique Ligands	IGP

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1CI3 \| pdb_00001ci3	Download File View File

CYTOCHROME F FROM THE B6F COMPLEX OF PHORMIDIUM LAMINOSUM

Carrell, C.J., Schlarb, B.G., Howe, C.J., Bendall, D.S., Cramer, W.A., Smith, J.L.

(1999) Biochemistry 38: 9590-9599

Released	1999-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Leptolyngbya laminosa
Macromolecule	PROTEIN (CYTOCHROME F) (protein)
Unique Ligands	HEC, ZN

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1E2B \| pdb_00001e2b	Download File View File

NMR STRUCTURE OF THE C10S MUTANT OF ENZYME IIB CELLOBIOSE OF THE PHOSPHOENOL-PYRUVATE DEPENDENT PHOSPHOTRANSFERASE SYSTEM OF ESCHERICHIA COLI, 17 STRUCTURES

Ab, E., Schuurman-Wolters, G., Reizer, J., Saier, M.H., Dijkstra, K., Scheek, R.M., Robillard, G.T.

(1997) Protein Sci 6: 304-314

Released	1997-07-23
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	ENZYME IIB-CELLOBIOSE (protein)

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1GV7 \| pdb_00001gv7	Download File View File

ARH-I, an angiogenin/RNase A chimera

Holloway, D.E., Shapiro, R., Hares, M.C., Leonidas, D.D., Acharya, K.R.

(2002) Biochemistry 41: 10482

Released	2002-08-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	ANGIOGENIN (protein)
Unique Ligands	CIT

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1H9C \| pdb_00001h9c	Download File View File

NMR structure of cysteinyl-phosphorylated enzyme IIB of the N,N'-diacetylchitobiose specific phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli.

Ab, E., Schuurman-Wolters, G.K., Nijlant, D., Dijkstra, K., Saier, M.H., Robillard, G.T., Scheek, R.M.

(2001) J Mol Biology 308: 993-1009

Released	2001-05-21
Method	SOLUTION NMR
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	PTS SYSTEM, CHITOBIOSE-SPECIFIC IIB COMPONENT (protein)

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1IGS \| pdb_00001igs	Download File View File

INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS AT 2.0 A RESOLUTION

Hennig, M., Darimont, B., Kirschner, K., Jansonius, J.N.

(1995) Structure 3: 1295-1306

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE (protein)
Unique Ligands	PO4

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1IIB \| pdb_00001iib	Download File View File

CRYSTAL STRUCTURE OF IIBCELLOBIOSE FROM ESCHERICHIA COLI

Van Montfort, R.L.M., Pijning, T., Kalk, K.H., Reizer, J., Saier, M.H., Thunnissen, M.M.G.M., Robillard, G.T., Dijkstra, B.W.

(1997) Structure 5: 217-225

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	ENZYME IIB OF THE CELLOBIOSE-SPECIFIC PHOSPHOTRANSFERASE SYSTEM (protein)

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1IOW \| pdb_00001iow	Download File View File

COMPLEX OF Y216F D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHINATE

Knox, J.R., Moews, P.C., Fan, C.

(1997) Biochemistry 36: 2531-2538

Released	1997-02-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	D-ALA\:D-ALA LIGASE (protein)
Unique Ligands	ADP, MG, PHY

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1IV7 \| pdb_00001iv7	Download File View File

Crystal Structure of Single Chain Monellin

Tamada, T., Kato, Y., Kuroki, R.

To be published

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin (protein)

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1IV9 \| pdb_00001iv9	Download File View File

Crystal Structure of Single Chain Monellin

Tamada, T., Kato, Y., Kuroki, R.

To be published

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin (protein)

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1JCH \| pdb_00001jch	Download File View File

Crystal Structure of Colicin E3 in Complex with its Immunity Protein

Soelaiman, S., Jakes, K., Wu, N., Li, C., Shoham, M.

(2001) Mol Cell 8: 1053-1062

Released	2001-11-30
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	COLICIN E3 (protein) COLICIN E3 IMMUNITY PROTEIN (protein)
Unique Ligands	CIT, GOL

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1MPY \| pdb_00001mpy	Download File View File

STRUCTURE OF CATECHOL 2,3-DIOXYGENASE (METAPYROCATECHASE) FROM PSEUDOMONAS PUTIDA MT-2

Kita, A., Kita, S., Fujisawa, I., Inaka, K., Ishida, T., Horiike, K., Nozaki, M., Miki, K.

(1999) Structure 7: 25-34

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas putida
Macromolecule	CATECHOL 2,3-DIOXYGENASE (protein)
Unique Ligands	ACN, FE2

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1NMK \| pdb_00001nmk	Download File View File

The Sanglifehrin-Cyclophilin Interaction: Degradation Work, Synthetic Macrocyclic Analogues, X-ray Crystal Structure and Binding Data

Kallen, J., Sedrani, R., Wagner, J.

(2003) J Am Chem Soc 125: 3849-3859

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	SFM

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1R44 \| pdb_00001r44	Download File View File

Crystal Structure of VanX

Pratt, S.D., Katz, L., Severin, J.M., Holzman, T., Park, C.H.

(1998) Mol Cell 2: 75-84

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Enterococcus faecium
Macromolecule	D-alanyl-D-alanine dipeptidase (protein)
Unique Ligands	ZN

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1RH1 \| pdb_00001rh1	Download File View File

crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution

Hilsenbeck, J.L., Park, H., Chen, G., Youn, B., Postle, K., Kang, C.

(2004) Mol Microbiol 51: 711-720

Released	2004-03-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Colicin B (protein)

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1S62 \| pdb_00001s62	Download File View File

Solution structure of the Escherichia coli TolA C-terminal domain

Deprez, C., Blanchard, L., Simorre, J.-P., Gavioli, M., Guerlesquin, F., Lazdunski, C., Lloubes, R., Marion, D.

(2005) J Mol Biology 346: 1047-1057

Released	2005-02-15
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	TolA protein (protein)

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1TKW \| pdb_00001tkw	Download File View File

The transient complex of poplar plastocyanin with turnip cytochrome f determined with paramagnetic NMR

Lange, C., Cornvik, T., Diaz-Moreno, I., Ubbink, M.

(2005) Biochim Biophys Acta 1707: 179-188

Released	2005-05-24
Method	SOLUTION NMR
Organisms	Brassica rapa subsp. rapa Populus nigra
Macromolecule	Cytochrome f (protein) Plastocyanin A (protein)
Unique Ligands	CU, HEC

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1XCK \| pdb_00001xck	Download File View File

Crystal structure of apo GroEL

Bartolucci, C., Lamba, D., Grazulis, S., Manakova, E., Heumann, H.

(2005) J Mol Biology 354: 940-951

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Escherichia coli
Macromolecule	60 kDa chaperonin (protein)
Unique Ligands	K, MPD, PEG, SO4

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1YND \| pdb_00001ynd	Download File View File

Structure of human cyclophilin A in complex with the novel immunosuppressant sanglifehrin A at 1.6A resolution

Kallen, J., Sedrani, R., Zenke, G., Wagner, J.

(2005) J Biological Chem 280: 21965-21971

Released	2005-04-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Peptidyl-prolyl cis-trans isomerase A (protein)
Unique Ligands	SFA

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2A4N \| pdb_00002a4n	Download File View File

Crystal structure of aminoglycoside 6'-N-acetyltransferase complexed with coenzyme A

Burk, D.L., Xiong, B., Breitbach, C., Berghuis, A.M.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1273-1279

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Enterococcus faecium
Macromolecule	aac(6')-Ii (protein)
Unique Ligands	COA, SO4

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2B5U \| pdb_00002b5u	Download File View File

Crystal Structure Of Colicin E3 V206C Mutant In Complex With Its Immunity Protein

Nallini Vijayarangan, A., Nithianantham, S., Nan, W., Jakes, K., Shoham, M.

To be published

Released	2006-11-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Colicin E3 (protein) Colicin E3 immunity protein (protein)
Unique Ligands	CIT

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2B7L \| pdb_00002b7l	Download File View File

Crystal Structure of CTP:Glycerol-3-Phosphate Cytidylyltransferase from Staphylococcus aureus

Fong, D.H., Yim, V.C.-N., D'Elia, M.A., Brown, E.D., Berghuis, A.M.

(2006) Biochim Biophys Acta 1764: 63-69

Released	2006-06-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Staphylococcus aureus
Macromolecule	glycerol-3-phosphate cytidylyltransferase (protein)

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2OQP \| pdb_00002oqp	Download File View File

Solution structure of human interleukin-21

Bondensgaard, K., Breinholt, J.

(2007) J Biological Chem 282: 23326-23336

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interleukin-21 (protein)

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2SFP \| pdb_00002sfp	Download File View File

ALANINE RACEMASE WITH BOUND PROPIONATE INHIBITOR

Morollo, A.A., Petsko, G.A., Ringe, D.

(1999) Biochemistry 38: 3293-3301

Released	1999-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN (ALANINE RACEMASE) (protein)
Unique Ligands	PLP, PPI

1 to 25 of 60 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A4Y | pdb_00001a4y

1A53 | pdb_00001a53

1CI3 | pdb_00001ci3

1E2B | pdb_00001e2b

1GV7 | pdb_00001gv7

1H9C | pdb_00001h9c

1IGS | pdb_00001igs

1IIB | pdb_00001iib

1IOW | pdb_00001iow

1IV7 | pdb_00001iv7

1IV9 | pdb_00001iv9

1JCH | pdb_00001jch

1MPY | pdb_00001mpy

1NMK | pdb_00001nmk

1R44 | pdb_00001r44

1RH1 | pdb_00001rh1

1S62 | pdb_00001s62

1TKW | pdb_00001tkw

1XCK | pdb_00001xck

1YND | pdb_00001ynd

2A4N | pdb_00002a4n

2B5U | pdb_00002b5u

2B7L | pdb_00002b7l

2OQP | pdb_00002oqp

2SFP | pdb_00002sfp