RCSB PDB: Search

1BNK \| pdb_00001bnk	Download File View File

HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA

Lau, A.Y., Schaerer, O.D., Samson, L., Verdine, G.L., Ellenberger, T.

(1998) Cell 95: 249-258

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE) (protein) DNA (5'-D(GPAPCPAPTPGPYRRPTPTPGPCPCPT)-3') (nucleic acid) DNA (5'-D(GPGPCPAPAPTPCPAPTPGPTPCPA)-3') (nucleic acid)

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1DIZ \| pdb_00001diz	Download File View File

CRYSTAL STRUCTURE OF E. COLI 3-METHYLADENINE DNA GLYCOSYLASE (ALKA) COMPLEXED WITH DNA

Hollis, T., Ichikawa, Y., Ellenberger, T.E.

(2000) EMBO J 19: 758-766

Released	2000-03-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	3-METHYLADENINE DNA GLYCOSYLASE II (protein) DNA (5'-D(GPAPCPAPTPGPAP(NRI)PTPGPCPCPT)-3') (nucleic acid) DNA (5'-D(GPGPCPAPAPTPCPAPTPGPTPCPA)-3') (nucleic acid)
Unique Ligands	NA

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1EWN \| pdb_00001ewn	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA

Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.

(2000) Proc Natl Acad Sci U S A 97: 13573-13578

Released	2000-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	3-METHYL-ADENINE DNA GLYCOSYLASE (protein) DNA (5'-D(GPAPCPAPTPGP(EDA)PTPTPGPCPC)-3') (nucleic acid) DNA (5'-D(PGPCPAPAPTPCPAPTPGPTPCPA)-3') (nucleic acid)
Unique Ligands	NA

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1F4R \| pdb_00001f4r	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA

Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.

(2000) Proc Natl Acad Sci U S A 97: 13573-13578

Released	2000-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	3-METHYL-ADENINE DNA GLYCOSYLASE (protein) DNA (5'-D(GPAPCPAPTPGP(EDA)PTPTPGPCPCPT)-3') (nucleic acid) DNA (5'-D(GPGPCPAPAPTPCPAPTPGPTPCPA)-3') (nucleic acid)
Unique Ligands	NA

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1F6O \| pdb_00001f6o	Download File View File

CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH DNA

Lau, A.Y., Wyatt, M.D., Glassner, B.J., Samson, L.D., Ellenberger, T.

(2000) Proc Natl Acad Sci U S A 97: 13573-13578

Released	2000-12-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	3-METHYL-ADENINE DNA GLYCOSYLASE (protein) DNA (5'-D(GPAPCPAPTPGP(YRR)PTPTPGPCPCPT)-3') (nucleic acid) DNA (5'-D(GPGPCPAPAPTPCPAPTPGPTPCPA)-3') (nucleic acid)
Unique Ligands	NA

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1MPG \| pdb_00001mpg	Download File View File

3-METHYLADENINE DNA GLYCOSYLASE II FROM ESCHERICHIA COLI

Labahn, J., Schaerer, O.D., Long, A., Ezaz-Nikpay, K., Verdine, G.L., Ellenberger, T.E.

(1996) Cell 86: 321-329

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	3-METHYLADENINE DNA GLYCOSYLASE II (protein)
Unique Ligands	GOL

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1PVS \| pdb_00001pvs	Download File View File

3-methyladenine Glcosylase II(AlkA) Hypoxanthine complex

Teale, M.

(2002) Bioconjug Chem 13: 403-407

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase II (protein)
Unique Ligands	7HP

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2H56 \| pdb_00002h56	Download File View File

Crystal structure of DNA-3-methyladenine glycosidase (10174367) from Bacillus halodurans at 2.55 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	DNA-3-methyladenine glycosidase (protein)

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2JHJ \| pdb_00002jhj	Download File View File

3-methyladenine dna-glycosylase from Archaeoglobus fulgidus

Leiros, I., Nabong, M.P., Grosvik, K., Ringvoll, J., Haugland, G.T., Uldal, L., Reite, K., Olsbu, I.K., Knaevelsrud, I., Moe, E., Andersen, O.A., Birkeland, N.K., Ruoff, P., Klungland, A., Bjelland, S.

(2007) EMBO J 26: 2206

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	3-METHYLADENINE DNA-GLYCOSYLASE (protein)
Unique Ligands	GOL, NA

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2JHN \| pdb_00002jhn	Download File View File

3-methyladenine dna-glycosylase from Archaeoglobus fulgidus

Leiros, I., Nabong, M.P., Grosvik, K., Ringvoll, J., Haugland, G.T., Uldal, L., Reite, K., Olsbu, I.K., Knaevelsrud, I., Moe, E., Andersen, O.A., Birkeland, N.K., Ruoff, P., Klungland, A., Bjelland, S.

(2007) EMBO J 26: 2206

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	3-METHYLADENINE DNA-GLYCOSYLASE (protein)
Unique Ligands	GOL, HG, MBO, MES, NA

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2YG8 \| pdb_00002yg8	Download File View File

Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans

Moe, E., Hall, D.R., Leiros, I., Talstad, V., Timmins, J., McSweeney, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 703-712

Released	2011-04-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Deinococcus radiodurans
Macromolecule	DNA-3-methyladenine glycosidase II, putative (protein)
Unique Ligands	CL, GOL, MES

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2YG9 \| pdb_00002yg9	Download File View File

Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans

Moe, E., Hall, D.R., Leiros, I., Talstad, V., Timmins, J., McSweeney, S.

(2012) Acta Crystallogr D Biol Crystallogr 68: 703-712

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Deinococcus radiodurans
Macromolecule	DNA-3-methyladenine glycosidase II, putative (protein)
Unique Ligands	CL, GOL, NI

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3CVS \| pdb_00003cvs	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Adenine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTPDGPDAP(8OG)PDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDAPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CVT \| pdb_00003cvt	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTP(8OG)PDAPDGPDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDCPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CW7 \| pdb_00003cw7	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTPDGPDAP(8OG)PDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDCPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CWA \| pdb_00003cwa	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D((8OG)PDAPDCPDAPDTPDGPDAPDGPDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDCPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CWS \| pdb_00003cws	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 2'-fluoro-2'-deoxyinosine:Thymine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTPDGPDAP(2FI)PDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDTPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CWT \| pdb_00003cwt	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 2'-fluoro-2'-deoxyinosine:Adenine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTPDGPDAP(2FI)PDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDAPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3CWU \| pdb_00003cwu	Download File View File

Crystal Structure of an AlkA Host/Guest Complex 2'-fluoro-2'-deoxy-1,N6-ethenoadenine:Thymine Base Pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2008) Structure 16: 1166-1174

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) DNA (5'-D(DGPDAPDCPDAPDTPDGPDAP(2FE)PDTPDGPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDAPDTPDTPDCPDAPDTPDGPDTPDC)-3') (nucleic acid)

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3D4V \| pdb_00003d4v	Download File View File

Crystal Structure of an AlkA Host/Guest Complex N7MethylGuanine:Cytosine Base Pair

Lee, S., Bowman, B.R., Wang, S., Verdine, G.L.

(2008) J Am Chem Soc 130: 11570-11571

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) 5'-D(DGPDAPDCPDAPDTPDGPDAP(FMG)PDTPDGPDCPDC)-3' (nucleic acid) 5'-D(DGPDGPDCPDAPDCPDTPDCPDAPDTPDGPDTPDC)-3' (nucleic acid)

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3OGD \| pdb_00003ogd	Download File View File

AlkA Undamaged DNA Complex: Interrogation of a G*:C base pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2010) J Biological Chem 285: 35783-35791

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) 5'-D(CPAP(BRU)PGPAPCP(BRU)PGPC)-3' (nucleic acid) 5'-D(GPCPAPGPTPCPAPTPG)-3' (nucleic acid)

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3OH6 \| pdb_00003oh6	Download File View File

AlkA Undamaged DNA Complex: Interrogation of a C:G base pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2010) J Biological Chem 285: 35783-35791

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) 5'-D(GPAPCPAP(BRU)PGPAPAP(BRU)PGPCPC)-3' (nucleic acid) 5'-D(GPCPAPTPTPCPAPTPGPTP*C)-3' (nucleic acid)

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3OH9 \| pdb_00003oh9	Download File View File

AlkA Undamaged DNA Complex: Interrogation of a T:A base pair

Bowman, B.R., Lee, S., Wang, S., Verdine, G.L.

(2010) J Biological Chem 285: 35783-35791

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA-3-methyladenine glycosylase 2 (protein) 5'-D(APCPAP(BRU)PGPAPAP(BRU)PGPCPC)-3' (nucleic acid) 5'-D(GPGPCPAPTPTPCPAPTPGPT)-3' (nucleic acid)

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3QI5 \| pdb_00003qi5	Download File View File

Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA

Lingaraju, G.M., Davis, C.A., Setser, J.W., Samson, L.D., Drennan, C.L.

(2011) J Biological Chem 286: 13205-13213

Released	2011-03-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DNA-3-methyladenine glycosylase (protein) DNA (5'-D(GPAPCPAPTPGP(EDC)PTPTPGPCPCPT)-3') (nucleic acid) DNA (5'-D(GPGPCPAPAPGPCPAPTPGPTPCPA)-3') (nucleic acid)
Unique Ligands	MN

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3S6I \| pdb_00003s6i	Download File View File

Schizosaccaromyces pombe 3-methyladenine DNA glycosylase (Mag1) in complex with abasic-DNA.

Adhikary, S., Eichman, B.F.

(2011) EMBO Rep 12: 1286-1292

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	DNA-3-methyladenine glycosylase 1 (protein) (5'-D(APAPGPAPCPTPTPGPGPAPC)-3') (nucleic acid) (5'-D(TPGPTPCPCPAP(3DR)PGPTPCPT)-3') (nucleic acid)
Unique Ligands	NA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BNK | pdb_00001bnk

1DIZ | pdb_00001diz

1EWN | pdb_00001ewn

1F4R | pdb_00001f4r

1F6O | pdb_00001f6o

1MPG | pdb_00001mpg

1PVS | pdb_00001pvs

2H56 | pdb_00002h56

2JHJ | pdb_00002jhj

2JHN | pdb_00002jhn

2YG8 | pdb_00002yg8

2YG9 | pdb_00002yg9

3CVS | pdb_00003cvs

3CVT | pdb_00003cvt

3CW7 | pdb_00003cw7

3CWA | pdb_00003cwa

3CWS | pdb_00003cws

3CWT | pdb_00003cwt

3CWU | pdb_00003cwu

3D4V | pdb_00003d4v

3OGD | pdb_00003ogd

3OH6 | pdb_00003oh6

3OH9 | pdb_00003oh9

3QI5 | pdb_00003qi5

3S6I | pdb_00003s6i