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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 4.1.3

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Search Summary

This query matches 294 Structures.

Refinements

Structure Determination Methodology

experimental (294)

Scientific Name of Source Organism

	Escherichia coli (38)
	Mycobacterium tuberculosis (21)
	Gallus gallus (15)
	Mycobacterium tuberculosis H37Rv (14)
	Escherichia coli K-12 (13)
	Homo sapiens (10)
	Thermotoga maritima (8)
	Saccharomyces cerevisiae (7)
	Staphylococcus aureus subsp. aureus NCTC 8325 (7)
	Haemophilus influenzae (6)

More...

Taxonomy

	Bacteria (232)
	Eukaryota (48)
	Archaea (9)
	other sequences (5)

Experimental Method

	X-RAY DIFFRACTION (291)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (294)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (125)
	2.0 - 2.5 (112)
	2.5 - 3.0 (46)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	1980 - 1984 (4)
	1990 - 1994 (9)
	1995 - 1999 (11)
	2000 - 2004 (62)
	2005 - 2009 (40)
	2010 - 2014 (89)
	2015 - 2019 (49)
	2020 - 2024 (30)

Enzyme Classification Name

	Lyases (294)
	Transferases (53)
	Isomerases (8)
	Hydrolases (9)
	Oxidoreductases (5)

Symmetry Type

	Dihedral (146)
	Cyclic (100)
	Asymmetric (63)
	Icosahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (160)
	Artifacts (31)
	Alpha and beta proteins (a+b) (23)
	All alpha proteins (27)
	Multi-domain proteins (alpha and beta) (4)

AllSelected

1 to 25 of 294 Structures

Page 1 of 12

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1AJ8 \| pdb_00001aj8	Download File View File

CITRATE SYNTHASE FROM PYROCOCCUS FURIOSUS

Russell, R.J.M., Ferguson, J.M.C., Hough, D.W., Danson, M.J., Taylor, G.L.

(1997) Biochemistry 36: 9983-9994

Released	1997-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	CIT, COA

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1AL6 \| pdb_00001al6	Download File View File

CHICKEN CITRATE SYNTHASE COMPLEX WITH N-HYDROXYAMIDO-COA AND OXALOACETATE

Usher, K.C., Remington, S.J.

To be published

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	HAX, OAA

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1AMZ \| pdb_00001amz	Download File View File

CHICKEN CITRATE SYNTHASE COMPLEX WITH NITROMETHYLDE-COA AND MALATE

Usher, K.C., Remington, S.J.

To be published

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	MLT, NMX

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1CSC \| pdb_00001csc	Download File View File

Structure of ternary complexes of citrate synthase with D-and L-malate: Mechanistic implications

Karpusas, M., Holland, D., Remington, S.J.

(1991) Biochemistry 30: 6024-6031

Released	1991-04-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	CMC, LMR

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1CSH \| pdb_00001csh	Download File View File

A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase

Usher, K.C., Remington, S.J.

(1994) Biochemistry 33: 7753-7759

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	AMX, OAA

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1CSI \| pdb_00001csi	Download File View File

A very short hydrogen bond provides only moderate stabilization of an enzyme: inhibitor complex of citrate synthase

Usher, K.C., Remington, S.J.

(1994) Biochemistry 33: 7753-7759

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	CMX, OAA

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1CSR \| pdb_00001csr	Download File View File

Alpha-fluoro acid and alpha-fluoro amide analogs of acetyl-coa as inhibitors of of citrate synthase: effect of pka matching on binding affinity and hydrogen bond length

Usher, K.C., Remington, S.J.

(1995) Biochemistry 34: 15459-15466

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	FAM, OAA

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1CSS \| pdb_00001css	Download File View File

ALPHA-FLUORO ACID AND ALPHA-FLUORO AMIDE ANALOGS OF ACETYL-COA AS INHIBITORS OF OF CITRATE SYNTHASE: EFFECT OF PKA MATCHING ON BINDING AFFINITY AND HYDROGEN BOND LENGTH

Usher, K.C., Remington, S.J.

(1995) Biochemistry 34: 15459-15466

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	FCX, OAA

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1CTS \| pdb_00001cts	Download File View File

CRYSTALLOGRAPHIC REFINEMENT AND ATOMIC MODELS OF TWO DIFFERENT FORMS OF CITRATE SYNTHASE AT 2.7 AND 1.7 ANGSTROMS RESOLUTION

Remington, S., Wiegand, G., Huber, R.

(1982) J Mol Biology 158: 111-152

Released	1984-07-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sus scrofa
Macromolecule	CITRATE SYNTHASE (protein)
Unique Ligands	CIT

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1D8C \| pdb_00001d8c	Download File View File

MALATE SYNTHASE G COMPLEXED WITH MAGNESIUM AND GLYOXYLATE

Howard, B.R., Endrizzi, J.A., Remington, S.J.

(2000) Biochemistry 39: 3156-3168

Released	1999-11-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MALATE SYNTHASE G (protein)
Unique Ligands	GLV, MG, SO4, SOR

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1DQU \| pdb_00001dqu	Download File View File

CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS

Britton, K.L., Langridge, S.J., Baker, P.J., Weeradechapon, K., Sedelnikova, S.E., De Lucas, J.R., Rice, D.W., Turner, G.

(2000) Structure 8: 349-362

Released	2000-05-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aspergillus nidulans
Macromolecule	ISOCITRATE LYASE (protein)

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1ET0 \| pdb_00001et0	Download File View File

CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI

Nakai, T., Mizutani, H., Miyahara, I., Hirotsu, K., Takeda, S., Jhee, K.H., Yoshimura, T., Esaki, N.

(2000) J Biochem 128: 29-38

Released	2000-07-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	4-AMINO-4-DEOXYCHORISMATE LYASE (protein)
Unique Ligands	PLP

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1EUA \| pdb_00001eua	Download File View File

SCHIFF BASE INTERMEDIATE IN KDPG ALDOLASE FROM ESCHERICHIA COLI

Allard, J., Grochulski, P., Sygusch, J.

(2001) Proc Natl Acad Sci U S A 98: 3679-3684

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	KDPG ALDOLASE (protein)
Unique Ligands	ACT, PYR, SO4

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1EUN \| pdb_00001eun	Download File View File

STRUCTURE OF 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE FROM ESCHERICHIA COLI

Allard, J., Grochulski, P., Sygusch, J.

(2001) Proc Natl Acad Sci U S A 98: 3679-3684

Released	2001-02-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	KDPG ALDOLASE (protein)
Unique Ligands	SO4

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1F5Z \| pdb_00001f5z	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM I

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-12-20
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)

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1F61 \| pdb_00001f61	Download File View File

CRYSTAL STRUCTURE OF ISOCITRATE LYASE FROM MYCOBACTERIUM TUBERCULOSIS

Sharma, V., Sharma, S., Hoener zu Bentrup, K.H., McKinney, J.D., Russell, D.G., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 663-668

Released	2000-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ISOCITRATE LYASE (protein)
Unique Ligands	MG

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1F6K \| pdb_00001f6k	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM II

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYLNEURAMINATE LYASE (protein)
Unique Ligands	GOL, SO4

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1F6P \| pdb_00001f6p	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM III

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYL NEURAMINATE LYASE (protein)

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1F73 \| pdb_00001f73	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM III IN COMPLEX WITH SIALIC ACID ALDITOL

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYL NEURAMINATE LYASE (protein)
Unique Ligands	GOL, HMN

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1F74 \| pdb_00001f74	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM II COMPLEXED WITH 4-DEOXY-SIALIC ACID

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYL-NEURAMINATE LYASE (protein)
Unique Ligands	CL, GOL, NAY

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1F7B \| pdb_00001f7b	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM II IN COMPLEX WITH 4-OXO-SIALIC ACID

Barbosa, J.A.R.G., Smith, B.J., DeGori, R., Lawrence, M.C.

(2000) J Mol Biology 303: 405-421

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	N-ACETYL-NEURAMINATE LYASE (protein)
Unique Ligands	CL, NAU, NAV

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1F8I \| pdb_00001f8i	Download File View File

CRYSTAL STRUCTURE OF ISOCITRATE LYASE:NITROPROPIONATE:GLYOXYLATE COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS

Sharma, V., Sharma, S., Hoener zu Bentrup, K., McKinney, J.D., Russell, D.G., Jacobs Jr., W.R., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

(2000) Nat Struct Biol 7: 663-668

Released	2000-12-30
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ISOCITRATE LYASE (protein)
Unique Ligands	GLV, MG, SIN