RCSB PDB: Search

(2002) EMBO J 21: 2242-2252

Released	2002-05-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 Receptor (protein) 5'-D(CPAPCPGPGPTPTPCPAPCPGPAPGPGPTPTPCPA)-3' (nucleic acid) 5'-D(TPGPAPAPCPCPTPCPGPTPGPAPAPCPCPGPTPG)-3' (nucleic acid)
Unique Ligands	ZN

1KB4 \| pdb_00001kb4	Download File View File

Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response Element

(2002) EMBO J 21: 2242-2252

Released	2002-05-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 Receptor (protein) 5'-D(CPAPCPAPGPGPTPCPAPCPGPAPAPGPGPTPCPA)-3' (nucleic acid) 5'-D(TPGPAPCPCPTPTPCPGPTPGPAPCPCPTPGPTPG)-3' (nucleic acid)
Unique Ligands	ZN

1KB6 \| pdb_00001kb6	Download File View File

Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element

(2002) EMBO J 21: 2242-2252

Released	2002-05-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 Receptor (protein) 5'-D(CPAPCPGPGPGPTPGPAPAPTPGPAPGPGPAPCPA)-3' (nucleic acid) 5'-D(TPGPTPCPCPTPCPAPTPTPCPAPCPCPCPGPTPG)-3' (nucleic acid)
Unique Ligands	ZN

1RJK \| pdb_00001rjk	Download File View File

crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2MD and a synthetic peptide containing the NR2 box of DRIP 205

Vanhooke, J.L., Benning, M.M., Bauer, C.B., Pike, J.W., DeLuca, H.F.

(2004) Biochemistry 43: 4101-4110

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VDZ

1RK3 \| pdb_00001rk3	Download File View File

crystal structure of the rat vitamin D receptor ligand binding domain complexed with 1,25-dihydroxyvitamin D3 and a synthetic peptide containing the NR2 box of DRIP 205

Vanhooke, J.L., M Benning, M., Bauer, C.B., Pike, J.W., DeLuca, H.F.

(2004) Biochemistry 43: 4101-4110

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VDX

1RKG \| pdb_00001rkg	Download File View File

crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2MbisP and a synthetic peptide containing the NR2 box of DRIP 205

Vanhooke, J.L., Benning, M.M., Bauer, C.B., Pike, J.W., DeLuca, H.F.

(2004) Biochemistry 43: 4101-4110

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VD1

1RKH \| pdb_00001rkh	Download File View File

crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2AM20R and a synthetic peptide containing the NR2 box of DRIP 205

Vanhooke, J.L., Benning, M.M., Bauer, C.B., Pike, J.W., F DeLuca, H.

(2004) Biochemistry 43: 4101-4110

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VD2

1S0Z \| pdb_00001s0z	Download File View File

Crystal structure of the VDR LBD complexed to seocalcitol.

Tocchini-Valentini, G., Rochel, N., Wurtz, J.M., Moras, D.

(2004) J Med Chem 47: 1956-1961

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	EB1

1S19 \| pdb_00001s19	Download File View File

Crystal structure of VDR ligand binding domain complexed to calcipotriol.

Tocchini-Valentini, G., Rochel, N., Wurtz, J.M., Moras, D.

(2004) J Med Chem 47: 1956-1961

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	MC9

1YNW \| pdb_00001ynw	Download File View File

Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element

(2004) J Steroid Biochem Mol Biol 89-90: 215-219

Released	2005-02-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Retinoic acid receptor RXR-alpha (protein) Vitamin D3 Receptor (protein) 5'-d(TPTPAPGPGPTPCPAPCPGPAPAPGPGPTPCPAPA)-3' (nucleic acid) 5'-d(TPTPTPGPAPCPCPTPTPCPGPTPGPAPCPCPTPA)-3' (nucleic acid)
Unique Ligands	ZN

Vanhooke, J.L., Benning, M.M., DeLuca, H.F.

2O4J \| pdb_00002o4j	Download File View File

Crystal Structure of Rat Vitamin D Receptor Ligand Binding Domain Complexed with VitIII 17-20Z and the NR2 Box of DRIP 205

(2007) Arch Biochem Biophys 460: 161-165

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor-binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VD4

Vanhooke, J.L., Benning, M.M., DeLuca, H.F.

2O4R \| pdb_00002o4r	Download File View File

Crystal Structure of Rat Vitamin D Receptor Ligand Binding Domain Complexed with VitIII 17-20E and the NR2 Box of DRIP 205

(2007) Arch Biochem Biophys 460: 161-165

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Peroxisome proliferator-activated receptor-binding protein (protein) Vitamin D3 receptor (protein)
Unique Ligands	VD5

2ZL9 \| pdb_00002zl9	Download File View File

2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure

Shimizu, M., Miyamoto, Y., Nakabayashi, M., Masuno, H., Ikura, T., Ito, N.

(2008) Bioorg Med Chem 16: 6949-6964

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus norvegicus
Macromolecule	Coactivator peptide DRIP (protein) Vitamin D3 receptor (protein)
Unique Ligands	VDA

2ZLA \| pdb_00002zla	Download File View File

2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure

Shimizu, M., Miyamoto, Y., Nakabayashi, M., Masuno, H., Ikura, T., Ito, N.

(2008) Bioorg Med Chem 16: 6949-6964

Released	2008-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Coactivator peptide DRIP (protein) Vitamin D3 receptor (protein)
Unique Ligands	VDB

2ZLC \| pdb_00002zlc	Download File View File

2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3 analogs: Synthesis, biological evaluation and crystal structure

Shimizu, M., Miyamoto, Y., Nakabayashi, M., Masuno, H., Ikura, T., Ito, N.

(2008) Bioorg Med Chem 16: 6949-6964

Released	2008-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Coactivator peptide DRIP (protein) Vitamin D3 receptor (protein)
Unique Ligands	VDX

2ZMH \| pdb_00002zmh	Download File View File

Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism

Nakabayashi, M., Yamada, S., Tanaka, T., Igarashi, M., Yoshimoto, N., Ikura, T., Ito, N., Makishima, M., Tokiwa, H., DeLuca, H.F., Shimizu, M.

(2008) J Med Chem 51: 5320-5329

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	NYA

2ZMI \| pdb_00002zmi	Download File View File

Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism

Nakabayashi, M., Yamada, S., Tanaka, T., Igarashi, M., Yoshimoto, N., Ikura, T., Ito, N., Makishima, M., Tokiwa, H., DeLuca, H.F., Shimizu, M.

(2008) J Med Chem 51: 5320-5329

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	EDO, FMT, TT2

2ZMJ \| pdb_00002zmj	Download File View File

Crystal Structure of Rat Vitamin D Receptor Bound to Adamantyl Vitamin D Analogs: Structural Basis for Vitamin D Receptor Antagonism and/or Partial Agonism

Nakabayashi, M., Yamada, S., Tanaka, T., Igarashi, M., Yoshimoto, N., Ikura, T., Ito, N., Makishima, M., Tokiwa, H., DeLuca, H.F., Shimizu, M.

(2008) J Med Chem 51: 5320-5329

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	MI4

2ZXM \| pdb_00002zxm	Download File View File

A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket

Nakabayashi, M., Ikura, T., Ito, N.

(2009) J Med Chem 52: 1438-1449

Released	2009-02-17
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	JB1

2ZXN \| pdb_00002zxn	Download File View File

A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket

Nakabayashi, M., Ikura, T., Ito, N.

(2009) J Med Chem 52: 1438-1449

Released	2009-02-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	JC1

3A2H \| pdb_00003a2h	Download File View File

Crystal structure of the rat vitamin D receptor ligand binding domain complexed with TEI-9647 and a synthetic peptide containing the NR2 box of DRIP 205

(2010) Acta Crystallogr D Biol Crystallogr 66: 918-926

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Mediator of RNA polymerase II transcription subunit 1 peptide (protein) Vitamin D3 receptor (protein)
Unique Ligands	TEJ

3A2I \| pdb_00003a2i	Download File View File

Crystal structure of the human vitamin D receptor (H305F) ligand binding domain complexed with TEI-9647

(2010) Acta Crystallogr D Biol Crystallogr 66: 918-926

Released	2010-05-26
Method	X-RAY DIFFRACTION 3.27 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	TEJ

3A2J \| pdb_00003a2j	Download File View File

Crystal structure of the human vitamin D receptor (H305F/H397F) ligand binding domain complexed with TEI-9647

(2010) Acta Crystallogr D Biol Crystallogr 66: 918-926

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Vitamin D3 receptor (protein)
Unique Ligands	TEJ

3AFR \| pdb_00003afr	Download File View File

Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex

Inaba, Y., Nakabayashi, M., Itoh, T., Ikura, T., Ito, N., Yamamoto, K.

(2010) J Steroid Biochem Mol Biol 121: 146-150

Released	2010-03-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	13-meric peptide from Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	ICJ

3AUQ \| pdb_00003auq	Download File View File

Crystal structure of the human vitamin D receptor ligand binding domain complexed with Yne-diene type analog of active 14-epi-2alpha-methyl-19-norvitamin D3