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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "HYDROLASE/CARBOHYDRATE"

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Xanthomonas citri pv. citri str. 306 (4)
	Beta vulgaris (2)
	Thermotoga maritima MSB8 (2)
	Zobellia galactanivorans (2)
	Rhodothermus marinus (1)

Taxonomy

	Bacteria (9)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (4)

Enzyme Classification Name

Hydrolases (5)

Symmetry Type

	Asymmetric (8)
	Cyclic (3)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a/b) (2)

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1 to 11 of 11 Structures

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Explore in 3D

3ILF \| pdb_00003ilf	Download File View File

Crystal structure of porphyranase A (PorA) in complex with neo-porphyrotetraose

Hehemann, J.H., Correc, G., Barbeyron, T., Helbert, W., Michel, G., Czjzek, M.

(2010) Nature 464: 908-912

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	porphyranase A (protein)
Unique Ligands	ACT, CA, CL, MG
Unique branched monosaccharides	GAL, GLA, L6S

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3JUU \| pdb_00003juu	Download File View File

Crystal structure of porphyranase B (PorB) from Zobellia galactanivorans

Hehemann, J.H., Correc, G., Barbeyron, T., Michel, G., Czjzek, M.

(2010) Nature 464: 908-912

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zobellia galactanivorans
Macromolecule	porphyranase B (protein)
Unique Ligands	GOL, MES, SO4

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3W37 \| pdb_00003w37	Download File View File

Sugar beet alpha-glucosidase with acarbose

Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.

(2013) J Biological Chem 288: 19296-19303

Released	2013-05-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Beta vulgaris
Macromolecule	Alpha-glucosidase (protein)
Unique Ligands	ACY, GOL, NAG, SO4
Unique branched monosaccharides	AC1, FUC, GLC, NAG

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3W38 \| pdb_00003w38	Download File View File

Sugar beet alpha-glucosidase

Tagami, T., Yamashita, K., Okuyama, M., Mori, H., Yao, M., Kimura, A.

(2013) J Biological Chem 288: 19296-19303

Released	2013-05-29
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Beta vulgaris
Macromolecule	Alpha-glucosidase (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	FUC, NAG

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6BYC \| pdb_00006byc	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, GOL, PEG

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6BYE \| pdb_00006bye	Download File View File

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.126 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	ACT, BMA

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6BYG \| pdb_00006byg	Download File View File

Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

Explore in 3D

6BYI \| pdb_00006byi	Download File View File

Crystal structure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

Domingues, M.N., Vieira, P.S., Morais, M.A.B., Murakami, M.T.

(2018) J Biological Chem 293: 13636-13649

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Beta-mannosidase (protein)
Unique Ligands	BMA

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1OF3 \| pdb_00001of3	Download File View File

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module, TmCBM27

Boraston, A.B., Revett, T.J., Boraston, C.M., Nurizzo, D., Davies, G.J.

(2003) Structure 11: 665

Released	2003-04-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	CA

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1OF4 \| pdb_00001of4	Download File View File

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module, TmCBM27

Boraston, A.B., Revett, T.J., Boraston, C.M., Nurizzo, D., Davies, G.J.

(2003) Structure 11: 665

Released	2003-04-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	BETA-MANNOSIDASE (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	BMA

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3JXS \| pdb_00003jxs	Download File View File

Crystal structure of XG34, an evolved xyloglucan binding CBM

Divne, C., Tan, T.-C., Brumer, H., Gullfot, F.

(2009) Proteins 78: 785-789

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rhodothermus marinus
Macromolecule	Xylanase (protein)
Unique Ligands	ACT, CA

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3ILF | pdb_00003ilf

Crystal structure of porphyranase A (PorA) in complex with neo-porphyrotetraose

3JUU | pdb_00003juu

Crystal structure of porphyranase B (PorB) from Zobellia galactanivorans

3W37 | pdb_00003w37

Sugar beet alpha-glucosidase with acarbose

3W38 | pdb_00003w38

Sugar beet alpha-glucosidase

6BYC | pdb_00006byc

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

6BYE | pdb_00006bye

Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose

6BYG | pdb_00006byg

Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

6BYI | pdb_00006byi

Crystal structure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri

1OF3 | pdb_00001of3

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module, TmCBM27

1OF4 | pdb_00001of4

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module, TmCBM27

3JXS | pdb_00003jxs

Crystal structure of XG34, an evolved xyloglucan binding CBM

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ILF | pdb_00003ilf

3JUU | pdb_00003juu

3W37 | pdb_00003w37

3W38 | pdb_00003w38

6BYC | pdb_00006byc

6BYE | pdb_00006bye

6BYG | pdb_00006byg

6BYI | pdb_00006byi

1OF3 | pdb_00001of3

1OF4 | pdb_00001of4

3JXS | pdb_00003jxs