2P61 | pdb_00002p61

Crystal structure of protein TM1646 from Thermotoga maritima, Pfam DUF327

• PDB DOI: https://doi.org/10.2210/pdb2P61/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Thermotoga maritima MSB8
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-03-16 Released: 2007-03-27 
• Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Wu, B., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 
  0.288 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.255 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.257 (Depositor) 

Literature

Crystal structure of hypothetical protein TM_1646 from Thermotoga maritima

Bonanno, J.B., Freeman, J., Bain, K.T., Wu, B., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 18.79 kDa 
• Atom Count: 968 
• Modelled Residue Count: 114 
• Deposited Residue Count: 162 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein TM_1646	A	162	Thermotoga maritima MSB8	Mutation(s): 0  Gene Names: TM_1646
UniProt
Find proteins for Q9X1X9 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X1X9  Go to UniProtKB:  Q9X1X9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free:  0.288 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.255 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.257 (Depositor) 

Space Group: P 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.699	α = 90
b = 78.874	β = 90
c = 102.432	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
CCP4	data scaling
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-03-27 
Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Wu, B., Ozyurt, S., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-03-27
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2012-10-24
  Changes: Structure summary
• Version 1.4: 2017-10-18
  Changes: Refinement description
• Version 1.5: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.6: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.7: 2024-02-21
  Changes: Data collection, Database references