3J3Q

Atomic-level structure of the entire HIV-1 capsid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: PARTICLE 
  • Reconstruction Method: TOMOGRAPHY 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.

Zhao, G.Perilla, J.R.Yufenyuy, E.L.Meng, X.Chen, B.Ning, J.Ahn, J.Gronenborn, A.M.Schulten, K.Aiken, C.Zhang, P.

(2013) Nature 497: 643-646

  • DOI: 10.1038/nature12162
  • Primary Citation of Related Structures:  
    3J34, 3J3Y, 3J3Q, 3J4F

  • PubMed Abstract: 
  • Retroviral capsid proteins are conserved structurally but assemble into different morphologies. The mature human immunodeficiency virus-1 (HIV-1) capsid is best described by a 'fullerene cone' model, in which hexamers of the capsid protein are linked to form a hexagonal surface lattice that is closed by incorporating 12 capsid-protein pentamers ...

    Retroviral capsid proteins are conserved structurally but assemble into different morphologies. The mature human immunodeficiency virus-1 (HIV-1) capsid is best described by a 'fullerene cone' model, in which hexamers of the capsid protein are linked to form a hexagonal surface lattice that is closed by incorporating 12 capsid-protein pentamers. HIV-1 capsid protein contains an amino-terminal domain (NTD) comprising seven α-helices and a β-hairpin, a carboxy-terminal domain (CTD) comprising four α-helices, and a flexible linker with a 310-helix connecting the two structural domains. Structures of the capsid-protein assembly units have been determined by X-ray crystallography; however, structural information regarding the assembled capsid and the contacts between the assembly units is incomplete. Here we report the cryo-electron microscopy structure of a tubular HIV-1 capsid-protein assembly at 8 Å resolution and the three-dimensional structure of a native HIV-1 core by cryo-electron tomography. The structure of the tubular assembly shows, at the three-fold interface, a three-helix bundle with critical hydrophobic interactions. Mutagenesis studies confirm that hydrophobic residues in the centre of the three-helix bundle are crucial for capsid assembly and stability, and for viral infectivity. The cryo-electron-microscopy structures enable modelling by large-scale molecular dynamics simulation, resulting in all-atom models for the hexamer-of-hexamer and pentamer-of-hexamer elements as well as for the entire capsid. Incorporation of pentamers results in closer trimer contacts and induces acute surface curvature. The complete atomic HIV-1 capsid model provides a platform for further studies of capsid function and for targeted pharmacological intervention.


    Organizational Affiliation

    Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
capsid protein
WWA [auth 0], HXA [auth 1], EHA [auth 10], PHA [auth 11], AIA [auth 12], LIA [auth 13], WIA [auth 14], HJA [auth 15], SJA [auth 16], DKA [auth 17], OKA [auth 18], ZKA [auth 19], KWA [auth 1A], VWA [auth 1B], K [auth 1C], V [auth 1D], GA [auth 1E], RA [auth 1F], CB [auth 1G], NB [auth 1H], YB [auth 1I], JC [auth 1J], UC [auth 1K], FD [auth 1L], QD [auth 1M], BE [auth 1N], ME [auth 1O], XE [auth 1P], IF [auth 1Q], TF [auth 1R], EG [auth 1S], PG [auth 1T], AH [auth 1U], LH [auth 1V], WH [auth 1W], HI [auth 1X], SI [auth 1Y], DJ [auth 1Z], KLA [auth 1a], VLA [auth 1b], GMA [auth 1c], RMA [auth 1d], CNA [auth 1e], NNA [auth 1f], YNA [auth 1g], JOA [auth 1h], UOA [auth 1i], FPA [auth 1j], QPA [auth 1k], BQA [auth 1l], MQA [auth 1m], XQA [auth 1n], IRA [auth 1o], TRA [auth 1p], ESA [auth 1q], PSA [auth 1r], ATA [auth 1s], LTA [auth 1t], WTA [auth 1u], HUA [auth 1v], SUA [auth 1w], DVA [auth 1x], OVA [auth 1y], ZVA [auth 1z], SXA [auth 2], OJ [auth 20], ZJ [auth 21], KK [auth 22], VK [auth 23], GL [auth 24], RL [auth 25], CM [auth 26], NM [auth 27], YM [auth 28], JN [auth 29], AP [auth 2A], BP [auth 2B], CP [auth 2C], DP [auth 2D], EP [auth 2E], FP [auth 2F], GP [auth 2G], HP [auth 2H], IP [auth 2I], JP [auth 2J], KP [auth 2K], LP [auth 2L], MP [auth 2M], NP [auth 2N], OP [auth 2O], PP [auth 2P], QP [auth 2Q], RP [auth 2R], SP [auth 2S], TP [auth 2T], UP [auth 2U], VP [auth 2V], WP [auth 2W], XP [auth 2X], YP [auth 2Y], ZP [auth 2Z], UN [auth 2a], BO [auth 2b], CO [auth 2c], DO [auth 2d], EO [auth 2e], FO [auth 2f], GO [auth 2g], HO [auth 2h], IO [auth 2i], JO [auth 2j], KO [auth 2k], LO [auth 2l], MO [auth 2m], NO [auth 2n], OO [auth 2o], PO [auth 2p], QO [auth 2q], RO [auth 2r], SO [auth 2s], TO [auth 2t], UO [auth 2u], VO [auth 2v], WO [auth 2w], XO [auth 2x], YO [auth 2y], ZO [auth 2z], DYA [auth 3], AQ [auth 30], BQ [auth 31], CQ [auth 32], DQ [auth 33], EQ [auth 34], FQ [auth 35], GQ [auth 36], HQ [auth 37], IQ [auth 38], JQ [auth 39], KR [auth 3A], LR [auth 3B], MR [auth 3C], NR [auth 3D], OR [auth 3E], PR [auth 3F], QR [auth 3G], RR [auth 3H], SR [auth 3I], TR [auth 3J], UR [auth 3K], VR [auth 3L], WR [auth 3M], XR [auth 3N], YR [auth 3O], ZR [auth 3P], AS [auth 3Q], BS [auth 3R], CS [auth 3S], DS [auth 3T], ES [auth 3U], FS [auth 3V], GS [auth 3W], HS [auth 3X], IS [auth 3Y], JS [auth 3Z], KQ [auth 3a], LQ [auth 3b], MQ [auth 3c], NQ [auth 3d], OQ [auth 3e], PQ [auth 3f], QQ [auth 3g], RQ [auth 3h], SQ [auth 3i], TQ [auth 3j], UQ [auth 3k], VQ [auth 3l], WQ [auth 3m], XQ [auth 3n], YQ [auth 3o], ZQ [auth 3p], AR [auth 3q], BR [auth 3r], CR [auth 3s], DR [auth 3t], ER [auth 3u], FR [auth 3v], GR [auth 3w], HR [auth 3x], IR [auth 3y], JR [auth 3z], OYA [auth 4], KS [auth 40], LS [auth 41], MS [auth 42], NS [auth 43], OS [auth 44], PS [auth 45], QS [auth 46], RS [auth 47], SS [auth 48], TS [auth 49], UT [auth 4A], VT [auth 4B], WT [auth 4C], XT [auth 4D], YT [auth 4E], ZT [auth 4F], AU [auth 4G], BU [auth 4H], CU [auth 4I], DU [auth 4J], EU [auth 4K], FU [auth 4L], GU [auth 4M], HU [auth 4N], IU [auth 4O], JU [auth 4P], KU [auth 4Q], LU [auth 4R], MU [auth 4S], NU [auth 4T], OU [auth 4U], PU [auth 4V], QU [auth 4W], RU [auth 4X], SU [auth 4Y], TU [auth 4Z], US [auth 4a], VS [auth 4b], WS [auth 4c], XS [auth 4d], YS [auth 4e], ZS [auth 4f], AT [auth 4g], BT [auth 4h], CT [auth 4i], DT [auth 4j], ET [auth 4k], FT [auth 4l], GT [auth 4m], HT [auth 4n], IT [auth 4o], JT [auth 4p], KT [auth 4q], LT [auth 4r], MT [auth 4s], NT [auth 4t], OT [auth 4u], PT [auth 4v], QT [auth 4w], RT [auth 4x], ST [auth 4y], TT [auth 4z], ZYA [auth 5], UU [auth 50], VU [auth 51], WU [auth 52], XU [auth 53], YU [auth 54], ZU [auth 55], AV [auth 56], BV [auth 57], CV [auth 58], DV [auth 59], EW [auth 5A], FW [auth 5B], GW [auth 5C], HW [auth 5D], IW [auth 5E], JW [auth 5F], KW [auth 5G], LW [auth 5H], MW [auth 5I], NW [auth 5J], OW [auth 5K], PW [auth 5L], QW [auth 5M], RW [auth 5N], SW [auth 5O], TW [auth 5P], UW [auth 5Q], VW [auth 5R], WW [auth 5S], XW [auth 5T], YW [auth 5U], ZW [auth 5V], AX [auth 5W], BX [auth 5X], CX [auth 5Y], DX [auth 5Z], EV [auth 5a], FV [auth 5b], GV [auth 5c], HV [auth 5d], IV [auth 5e], JV [auth 5f], KV [auth 5g], LV [auth 5h], MV [auth 5i], NV [auth 5j], OV [auth 5k], PV [auth 5l], QV [auth 5m], RV [auth 5n], SV [auth 5o], TV [auth 5p], UV [auth 5q], VV [auth 5r], WV [auth 5s], XV [auth 5t], YV [auth 5u], ZV [auth 5v], AW [auth 5w], BW [auth 5x], CW [auth 5y], DW [auth 5z], AZA [auth 6], EX [auth 60], FX [auth 61], GX [auth 62], HX [auth 63], IX [auth 64], JX [auth 65], KX [auth 66], LX [auth 67], MX [auth 68], NX [auth 69], OY [auth 6A], PY [auth 6B], QY [auth 6C], RY [auth 6D], SY [auth 6E], TY [auth 6F], UY [auth 6G], VY [auth 6H], WY [auth 6I], XY [auth 6J], YY [auth 6K], ZY [auth 6L], AZ [auth 6M], BZ [auth 6N], CZ [auth 6O], DZ [auth 6P], EZ [auth 6Q], FZ [auth 6R], GZ [auth 6S], HZ [auth 6T], IZ [auth 6U], JZ [auth 6V], KZ [auth 6W], LZ [auth 6X], MZ [auth 6Y], NZ [auth 6Z], OX [auth 6a], 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[auth 7h], GAA [auth 7i], HAA [auth 7j], IAA [auth 7k], JAA [auth 7l], KAA [auth 7m], LAA [auth 7n], MAA [auth 7o], NAA [auth 7p], OAA [auth 7q], PAA [auth 7r], QAA [auth 7s], RAA [auth 7t], SAA [auth 7u], TAA [auth 7v], UAA [auth 7w], VAA [auth 7x], WAA [auth 7y], XAA [auth 7z], CZA [auth 8], YBA [auth 80], ZBA [auth 81], ACA [auth 82], BCA [auth 83], CCA [auth 84], DCA [auth 85], ECA [auth 86], FCA [auth 87], GCA [auth 88], HCA [auth 89], IDA [auth 8A], JDA [auth 8B], KDA [auth 8C], LDA [auth 8D], MDA [auth 8E], NDA [auth 8F], ODA [auth 8G], PDA [auth 8H], QDA [auth 8I], RDA [auth 8J], SDA [auth 8K], TDA [auth 8L], UDA [auth 8M], VDA [auth 8N], WDA [auth 8O], XDA [auth 8P], YDA [auth 8Q], ZDA [auth 8R], AEA [auth 8S], BEA [auth 8T], CEA [auth 8U], DEA [auth 8V], EEA [auth 8W], FEA [auth 8X], GEA [auth 8Y], HEA [auth 8Z], ICA [auth 8a], JCA [auth 8b], KCA [auth 8c], LCA [auth 8d], MCA [auth 8e], NCA [auth 8f], OCA [auth 8g], PCA [auth 8h], QCA [auth 8i], RCA [auth 8j], SCA [auth 8k], TCA [auth 8l], UCA [auth 8m], VCA [auth 8n], WCA [auth 8o], XCA [auth 8p], YCA [auth 8q], ZCA [auth 8r], ADA [auth 8s], BDA [auth 8t], CDA [auth 8u], DDA [auth 8v], EDA [auth 8w], FDA [auth 8x], GDA [auth 8y], HDA [auth 8z], DZA [auth 9], IEA [auth 90], JEA [auth 91], KEA [auth 92], LEA [auth 93], MEA [auth 94], NEA [auth 95], OEA [auth 96], PEA [auth 97], QEA [auth 98], REA [auth 99], SFA [auth 9A], TFA [auth 9B], UFA [auth 9C], VFA [auth 9D], WFA [auth 9E], XFA [auth 9F], YFA [auth 9G], ZFA [auth 9H], AGA [auth 9I], BGA [auth 9J], CGA [auth 9K], DGA [auth 9L], EGA [auth 9M], FGA [auth 9N], GGA [auth 9O], HGA [auth 9P], JGA [auth 9Q], KGA [auth 9R], LGA [auth 9S], MGA [auth 9T], NGA [auth 9U], OGA [auth 9V], PGA [auth 9W], QGA [auth 9X], RGA [auth 9Y], SGA [auth 9Z], SEA [auth 9a], TEA [auth 9b], UEA [auth 9c], VEA [auth 9d], WEA [auth 9e], XEA [auth 9f], YEA [auth 9g], ZEA [auth 9h], AFA [auth 9i], BFA [auth 9j], CFA [auth 9k], DFA [auth 9l], EFA [auth 9m], FFA [auth 9n], GFA [auth 9o], HFA [auth 9p], IFA [auth 9q], JFA [auth 9r], KFA [auth 9s], LFA [auth 9t], MFA [auth 9u], NFA [auth 9v], OFA [auth 9w], PFA [auth 9x], QFA [auth 9y], RFA [auth 9z], ZXA [auth A], AYA [auth B], BYA [auth C], CYA [auth D], EYA [auth E], FYA [auth F], GYA [auth G], HYA [auth H], IYA [auth I], JYA [auth J], KYA [auth K], LYA [auth L], MYA [auth M], NYA [auth N], PYA [auth O], QYA [auth P], RYA [auth Q], SYA [auth R], TYA [auth S], UYA [auth T], VYA [auth U], WYA [auth V], XYA [auth W], YYA [auth X], IGA [auth Y], TGA [auth Z], XWA [auth a], UGA [auth a0], VGA [auth a1], WGA [auth a2], XGA [auth a3], YGA [auth a4], ZGA [auth a5], AHA [auth a6], BHA [auth a7], CHA [auth a8], DHA [auth a9], HIA [auth aA], IIA [auth aB], JIA [auth aC], KIA [auth aD], MIA [auth aE], NIA [auth aF], OIA [auth aG], PIA [auth aH], QIA [auth aI], RIA [auth aJ], SIA [auth aK], TIA [auth aL], UIA [auth aM], VIA [auth aN], XIA [auth aO], YIA [auth aP], ZIA [auth aQ], AJA [auth aR], BJA [auth aS], CJA [auth aT], DJA [auth aU], EJA [auth aV], FJA [auth aW], GJA [auth aX], IJA [auth aY], JJA [auth aZ], FHA [auth aa], GHA [auth ab], HHA [auth ac], IHA [auth ad], JHA [auth ae], KHA [auth af], LHA [auth ag], MHA [auth ah], NHA [auth ai], OHA [auth aj], QHA [auth ak], RHA [auth al], SHA [auth am], THA [auth an], UHA [auth ao], VHA [auth ap], WHA [auth aq], XHA [auth ar], YHA [auth as], ZHA [auth at], BIA [auth au], CIA [auth av], DIA [auth aw], EIA [auth ax], FIA [auth ay], GIA [auth az], YWA [auth b], KJA [auth b0], LJA [auth b1], MJA [auth b2], NJA [auth b3], OJA [auth b4], PJA [auth b5], QJA [auth b6], RJA [auth b7], TJA [auth b8], UJA [auth b9], XKA [auth bA], YKA [auth bB], ALA [auth bC], BLA [auth bD], CLA [auth bE], DLA [auth bF], ELA [auth bG], FLA [auth bH], GLA [auth bI], HLA [auth bJ], ILA [auth bK], JLA [auth bL], LLA [auth bM], MLA [auth bN], NLA [auth bO], OLA [auth bP], PLA [auth bQ], QLA [auth bR], RLA [auth bS], SLA [auth bT], TLA [auth bU], ULA [auth bV], WLA [auth bW], XLA [auth bX], YLA [auth bY], ZLA [auth bZ], VJA [auth ba], WJA [auth bb], XJA [auth bc], YJA [auth bd], ZJA [auth be], AKA [auth bf], BKA [auth bg], CKA [auth bh], EKA [auth bi], FKA [auth bj], GKA [auth bk], HKA [auth bl], IKA [auth bm], JKA [auth bn], KKA [auth bo], LKA [auth bp], MKA [auth bq], NKA [auth br], PKA [auth bs], QKA [auth bt], RKA [auth bu], SKA [auth bv], TKA [auth bw], UKA [auth bx], VKA [auth by], WKA [auth bz], ZWA [auth c], AMA [auth c0], BMA [auth c1], CMA [auth c2], DMA [auth c3], EMA [auth c4], FMA [auth c5], HMA [auth c6], IMA [auth c7], JMA [auth c8], KMA [auth c9], ONA [auth cA], PNA [auth cB], QNA [auth cC], RNA [auth cD], SNA [auth cE], TNA [auth cF], UNA [auth cG], VNA [auth cH], WNA [auth cI], XNA [auth cJ], ZNA [auth cK], AOA [auth cL], BOA [auth cM], COA [auth cN], DOA [auth cO], EOA [auth cP], FOA [auth cQ], GOA [auth cR], HOA [auth cS], IOA [auth cT], KOA [auth cU], LOA [auth cV], MOA [auth cW], NOA [auth cX], OOA [auth cY], POA [auth cZ], LMA [auth ca], MMA [auth cb], NMA [auth cc], OMA [auth cd], PMA [auth ce], QMA [auth cf], SMA [auth cg], TMA [auth ch], UMA [auth ci], VMA [auth cj], WMA [auth ck], XMA [auth cl], YMA [auth cm], ZMA [auth cn], ANA [auth co], BNA [auth cp], DNA [auth cq], ENA [auth cr], FNA [auth cs], GNA [auth ct], HNA [auth cu], INA [auth cv], JNA [auth cw], KNA [auth cx], LNA [auth cy], MNA [auth cz], AXA [auth d], QOA [auth d0], ROA [auth d1], SOA [auth d2], TOA [auth d3], VOA [auth d4], WOA [auth d5], XOA [auth d6], YOA [auth d7], ZOA [auth d8], APA [auth d9], EQA [auth dA], FQA [auth dB], GQA [auth dC], HQA [auth dD], IQA [auth dE], JQA [auth dF], KQA [auth dG], LQA [auth dH], NQA [auth dI], OQA [auth dJ], PQA [auth dK], QQA [auth dL], RQA [auth dM], SQA [auth dN], TQA [auth dO], UQA [auth dP], VQA [auth dQ], WQA [auth dR], YQA [auth dS], ZQA [auth dT], ARA [auth dU], BRA [auth dV], CRA [auth dW], DRA [auth dX], ERA [auth dY], FRA [auth dZ], BPA [auth da], CPA [auth db], DPA [auth dc], EPA [auth dd], GPA [auth de], HPA [auth df], IPA [auth dg], JPA [auth dh], KPA [auth di], LPA [auth dj], MPA [auth dk], NPA [auth dl], OPA [auth dm], PPA [auth dn], RPA [auth do], SPA [auth dp], TPA [auth dq], UPA [auth dr], VPA [auth ds], WPA [auth dt], XPA [auth du], YPA [auth dv], ZPA [auth dw], AQA [auth dx], CQA [auth dy], DQA [auth dz], BXA [auth e], GRA [auth e0], HRA [auth e1], JRA [auth e2], KRA [auth e3], LRA [auth e4], MRA [auth e5], NRA [auth e6], ORA [auth e7], PRA [auth e8], QRA [auth e9], USA [auth eA], VSA [auth eB], WSA [auth eC], XSA [auth eD], YSA [auth eE], ZSA [auth eF], BTA [auth eG], CTA [auth eH], DTA [auth eI], ETA [auth eJ], FTA [auth eK], GTA [auth eL], HTA [auth eM], ITA [auth eN], JTA [auth eO], KTA [auth eP], MTA [auth eQ], NTA [auth eR], OTA [auth eS], PTA [auth eT], QTA [auth eU], RTA [auth eV], STA [auth eW], TTA [auth eX], UTA [auth eY], VTA [auth eZ], RRA [auth ea], SRA [auth eb], URA [auth ec], VRA [auth ed], WRA [auth ee], XRA [auth ef], YRA [auth eg], ZRA [auth eh], ASA [auth ei], BSA [auth ej], CSA [auth ek], DSA [auth el], FSA [auth em], GSA [auth en], HSA [auth eo], ISA [auth ep], JSA [auth eq], KSA [auth er], LSA [auth es], MSA [auth et], NSA [auth eu], OSA [auth ev], QSA [auth ew], RSA [auth ex], SSA [auth ey], TSA [auth ez], CXA [auth f], XTA [auth f0], YTA [auth f1], ZTA [auth f2], AUA [auth f3], BUA [auth f4], CUA [auth f5], DUA [auth f6], EUA [auth f7], FUA [auth f8], GUA [auth f9], KVA [auth fA], LVA [auth fB], MVA [auth fC], NVA [auth fD], PVA [auth fE], QVA [auth fF], RVA [auth fG], SVA [auth fH], TVA [auth fI], UVA [auth fJ], VVA [auth fK], WVA [auth fL], XVA [auth fM], YVA [auth fN], AWA [auth fO], BWA [auth fP], CWA [auth fQ], DWA [auth fR], EWA [auth fS], FWA [auth fT], GWA [auth fU], HWA [auth fV], IWA [auth fW], JWA [auth fX], LWA [auth fY], MWA [auth fZ], IUA [auth fa], JUA [auth fb], KUA [auth fc], LUA [auth fd], MUA [auth fe], NUA [auth ff], OUA [auth fg], PUA [auth fh], QUA [auth fi], RUA [auth fj], TUA [auth fk], UUA [auth fl], VUA [auth fm], WUA [auth fn], XUA [auth fo], YUA [auth fp], ZUA [auth fq], AVA [auth fr], BVA [auth fs], CVA [auth ft], EVA [auth fu], FVA [auth fv], GVA [auth fw], HVA [auth fx], IVA [auth fy], JVA [auth fz], DXA [auth g], NWA [auth g0], OWA [auth g1], PWA [auth g2], QWA [auth g3], RWA [auth g4], SWA [auth g5], TWA [auth g6], UWA [auth g7], A [auth g8], B [auth g9], EA [auth gA], FA [auth gB], HA [auth gC], IA [auth gD], JA [auth gE], KA [auth gF], LA [auth gG], MA [auth gH], NA [auth gI], OA [auth gJ], PA [auth gK], QA [auth gL], SA [auth gM], TA [auth gN], UA [auth gO], VA [auth gP], WA [auth gQ], XA [auth gR], YA [auth gS], ZA [auth gT], AB [auth gU], BB [auth gV], DB [auth gW], EB [auth gX], FB [auth gY], GB [auth gZ], C [auth ga], D [auth gb], E [auth gc], F [auth gd], G [auth ge], H [auth gf], I [auth gg], J [auth gh], L [auth gi], M [auth gj], N [auth gk], O [auth gl], P [auth gm], Q [auth gn], R [auth go], S [auth gp], T [auth gq], U [auth gr], W [auth gs], X [auth gt], Y [auth gu], Z [auth gv], AA [auth gw], BA [auth gx], CA [auth gy], DA [auth gz], EXA [auth h], HB [auth h0], IB [auth h1], JB [auth h2], KB [auth h3], LB [auth h4], MB [auth h5], OB [auth h6], PB [auth h7], QB [auth h8], RB [auth h9], VC [auth hA], WC [auth hB], XC [auth hC], YC [auth hD], ZC [auth hE], AD [auth hF], BD [auth hG], CD [auth hH], DD [auth hI], ED [auth hJ], GD [auth hK], HD [auth hL], ID [auth hM], JD [auth hN], KD [auth hO], LD [auth hP], MD [auth hQ], ND [auth hR], OD [auth hS], PD [auth hT], RD [auth hU], SD [auth hV], TD [auth hW], UD [auth hX], VD [auth hY], WD [auth hZ], SB [auth ha], TB [auth hb], UB [auth hc], VB [auth hd], WB [auth he], XB [auth hf], ZB [auth hg], AC [auth hh], BC [auth hi], CC [auth hj], DC [auth hk], EC [auth hl], FC [auth hm], GC [auth hn], HC [auth ho], IC [auth hp], KC [auth hq], LC [auth hr], MC [auth hs], NC [auth ht], OC [auth hu], PC [auth hv], QC [auth hw], RC [auth hx], SC [auth hy], TC [auth hz], FXA [auth i], XD [auth i0], YD [auth i1], ZD [auth i2], AE [auth i3], CE [auth i4], DE [auth i5], EE [auth i6], FE [auth i7], GE [auth i8], HE [auth i9], LF [auth iA], MF [auth iB], NF [auth iC], OF [auth iD], PF [auth iE], QF [auth iF], RF [auth iG], SF [auth iH], UF [auth iI], VF [auth iJ], WF [auth iK], XF [auth iL], YF [auth iM], ZF [auth iN], AG [auth iO], BG [auth iP], CG [auth iQ], DG [auth iR], FG [auth iS], GG [auth iT], HG [auth iU], IG [auth iV], JG [auth iW], KG [auth iX], LG [auth iY], MG [auth iZ], IE [auth ia], JE [auth ib], KE [auth ic], LE [auth id], NE [auth ie], OE [auth if], PE [auth ig], QE [auth ih], RE [auth ii], SE [auth ij], TE [auth ik], UE [auth il], VE [auth im], WE [auth in], YE [auth io], ZE [auth ip], AF [auth iq], BF [auth ir], CF [auth is], DF [auth it], EF [auth iu], FF [auth iv], GF [auth iw], HF [auth ix], JF [auth iy], KF [auth iz], GXA [auth j], NG [auth j0], OG [auth j1], QG [auth j2], RG [auth j3], SG [auth j4], TG [auth j5], UG [auth j6], VG [auth j7], WG [auth j8], XG [auth j9], BI [auth jA], CI [auth jB], DI [auth jC], EI [auth jD], FI [auth jE], GI [auth jF], II [auth jG], JI [auth jH], KI [auth jI], LI [auth jJ], MI [auth jK], NI [auth jL], OI [auth jM], PI [auth jN], QI [auth jO], RI [auth jP], TI [auth jQ], UI [auth jR], VI [auth jS], WI [auth jT], XI [auth jU], YI [auth jV], ZI [auth jW], AJ [auth jX], BJ [auth jY], CJ [auth jZ], YG [auth ja], ZG [auth jb], BH [auth jc], CH [auth jd], DH [auth je], EH [auth jf], FH [auth jg], GH [auth jh], HH [auth ji], IH [auth jj], JH [auth jk], KH [auth jl], MH [auth jm], NH [auth jn], OH [auth jo], PH [auth jp], QH [auth jq], RH [auth jr], SH [auth js], TH [auth jt], UH [auth ju], VH [auth jv], XH [auth jw], YH [auth jx], ZH [auth jy], AI [auth jz], IXA [auth k], EJ [auth k0], FJ [auth k1], GJ [auth k2], HJ [auth k3], IJ [auth k4], JJ [auth k5], KJ [auth k6], LJ [auth k7], MJ [auth k8], NJ [auth k9], RK [auth kA], SK [auth kB], TK [auth kC], UK [auth kD], WK [auth kE], XK [auth kF], YK [auth kG], ZK [auth kH], AL [auth kI], BL [auth kJ], CL [auth kK], DL [auth kL], EL [auth kM], FL [auth kN], HL [auth kO], IL [auth kP], JL [auth kQ], KL [auth kR], LL [auth kS], ML [auth kT], NL [auth kU], OL [auth kV], PL [auth kW], QL [auth kX], SL [auth kY], TL [auth kZ], PJ [auth ka], QJ [auth kb], RJ [auth kc], SJ [auth kd], TJ [auth ke], UJ [auth kf], VJ [auth kg], WJ [auth kh], XJ [auth ki], YJ [auth kj], AK [auth kk], BK [auth kl], CK [auth km], DK [auth kn], EK [auth ko], FK [auth kp], GK [auth kq], HK [auth kr], IK [auth ks], JK [auth kt], LK [auth ku], MK [auth kv], NK [auth kw], OK [auth kx], PK [auth ky], QK [auth kz], JXA [auth l], UL [auth l0], VL [auth l1], WL [auth l2], XL [auth l3], YL [auth l4], ZL [auth l5], AM [auth l6], BM [auth l7], DM [auth l8], EM [auth l9], HN [auth lA], IN [auth lB], KN [auth lC], LN [auth lD], MN [auth lE], NN [auth lF], ON [auth lG], PN [auth lH], QN [auth lI], RN [auth lJ], SN [auth lK], TN [auth lL], VN [auth lM], WN [auth lN], XN [auth lO], YN [auth lP], ZN [auth lQ], AO [auth lR], FM [auth la], GM [auth lb], HM [auth lc], IM [auth ld], JM [auth le], KM [auth lf], LM [auth lg], MM [auth lh], OM [auth li], PM [auth lj], QM [auth lk], RM [auth ll], SM [auth lm], TM [auth ln], UM [auth lo], VM [auth lp], WM [auth lq], XM [auth lr], ZM [auth ls], AN [auth lt], BN [auth lu], CN [auth lv], DN [auth lw], EN [auth lx], FN [auth ly], GN [auth lz], KXA [auth m], LXA [auth n], MXA [auth o], NXA [auth p], OXA [auth q], PXA [auth r], QXA [auth s], RXA [auth t], TXA [auth u], UXA [auth v], VXA [auth w], WXA [auth x], XXA [auth y], YXA [auth z]
231Human immunodeficiency virus 1Mutation(s): 1 
Gene Names: gag
Find proteins for Q79791 (Human immunodeficiency virus 1)
Explore Q79791 
Go to UniProtKB:  Q79791
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: PARTICLE 
  • Reconstruction Method: TOMOGRAPHY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-05-29
    Type: Initial release
  • Version 1.1: 2013-06-12
    Changes: Database references
  • Version 1.2: 2014-07-09
    Changes: Other
  • Version 1.3: 2014-12-10
    Changes: Other
  • Version 1.4: 2018-07-18
    Changes: Data collection