The 1.43 angstrom crystal structure of bacteriorhodopsin crystallized from bicelles
Saiki, H., Sugiyama, S., Kakinouchi, K., Kawatake, S., Hanashima, S., Matsumori, N., Murata, M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Bacteriorhodopsin | 226 | Halobacterium salinarum R1 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for B0R5N9 (Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)) Go to UniProtKB:  B0R5N9 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RET Query on RET | B [auth A] | RETINAL C20 H28 O NCYCYZXNIZJOKI-OVSJKPMPSA-N | |||
R16 Query on R16 | J [auth A] | HEXADECANE C16 H34 DCAYPVUWAIABOU-UHFFFAOYSA-N | |||
D12 Query on D12 | E [auth A] F [auth A] G [auth A] L [auth A] M [auth A] | DODECANE C12 H26 SNRUBQQJIBEYMU-UHFFFAOYSA-N | |||
D10 Query on D10 | H [auth A], I [auth A], K [auth A], R [auth A] | DECANE C10 H22 DIOQZVSQGTUSAI-UHFFFAOYSA-N | |||
DD9 Query on DD9 | N [auth A] | nonane C9 H20 BKIMMITUMNQMOS-UHFFFAOYSA-N | |||
HP6 Query on HP6 | D [auth A] | HEPTANE C7 H16 IMNFDUFMRHMDMM-UHFFFAOYSA-N | |||
PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.215 | α = 90 |
b = 102.794 | β = 90 |
c = 128.337 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |
Funding Organization | Location | Grant Number |
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JSPS KAKENHI | Japan | 25286051 |
JSPS KAKENHI | Japan | 25650051 |