5Q1Q

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000294a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.158 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA cross-link repair 1A protein343Homo sapiensMutation(s): 0 
Gene Names: DCLRE1AKIAA0086SNM1SNM1A
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PJP8 (Homo sapiens)
Go to UniProtKB:  Q6PJP8
PHAROS:  Q6PJP8
GTEx:  ENSG00000198924 
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AWS
Query on AWS

Download Ideal Coordinates CCD File 
D [auth A]8-[(dimethylamino)methyl]-4-methyl-7-oxidanyl-chromen-2-one
C13 H15 N O3
MCRZGRPWUSQQLP-UHFFFAOYSA-N
MLI
Query on MLI

Download Ideal Coordinates CCD File 
B [auth A]MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
NI
Query on NI

Download Ideal Coordinates CCD File 
C [auth A]NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.44 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.158 
  • R-Value Observed: 0.160 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.06α = 90
b = 56.99β = 90
c = 114.85γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-08
    Type: Initial release
  • Version 1.1: 2024-03-06
    Changes: Data collection, Database references