Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
Hubbard, P.A., Pan, X., Ohtaki, A., McNally, R., Honda, S., Kirino, Y., Murali, R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tudor and KH domain-containing protein homolog | 237 | Bombyx mori | Mutation(s): 0  Gene Names: PAPI | ||
UniProt | |||||
Find proteins for H9JD76 (Bombyx mori) Explore H9JD76  Go to UniProtKB:  H9JD76 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | H9JD76 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
2MR Query on 2MR | C [auth A], D [auth B] | N3, N4-DIMETHYLARGININE C8 H18 N4 O2 HVPFXCBJHIIJGS-LURJTMIESA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 66.03 | α = 90 |
b = 66.03 | β = 90 |
c = 224.48 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
iMOSFLM | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM106047 |