Crystal Structure of Lysyl-tRNA Synthetase from Mycobacterium ulcerans complexed with L-lysine
Dranow, D.M., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine--tRNA ligase | 506 | Mycobacterium ulcerans Agy99 | Mutation(s): 0  Gene Names: lysS, MUL_4181 EC: 6.1.1.6 | ||
UniProt | |||||
Find proteins for A0PV47 (Mycobacterium ulcerans (strain Agy99)) Explore A0PV47  Go to UniProtKB:  A0PV47 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0PV47 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | E [auth A], I [auth B], L [auth C], N [auth D] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
LYS Query on LYS | F [auth A], J [auth B], M [auth C], O [auth D] | LYSINE C6 H15 N2 O2 KDXKERNSBIXSRK-YFKPBYRVSA-O | |||
PEG Query on PEG | G [auth A], H [auth A], K [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 95.04 | α = 90.38 |
b = 96.69 | β = 104.84 |
c = 105.56 | γ = 117.15 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MoRDa | phasing |