Crystal Structure of KDM4D with tetrazole ligand
Malecki, P.H., Link, A., Weiss, M.S., Heinemann, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysine-specific demethylase 4D | 330 | Homo sapiens | Mutation(s): 0  Gene Names: KDM4D, JHDM3D, JMJD2D EC: 1.14.11 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6B0I6 (Homo sapiens) Explore Q6B0I6  Go to UniProtKB:  Q6B0I6 | |||||
PHAROS:  Q6B0I6 GTEx:  ENSG00000186280  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6B0I6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | I [auth A], J [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
CQK Query on CQK | H [auth A] | ~{N}-oxidanyl-4-(2~{H}-1,2,3,4-tetrazol-5-yl)pyridine-2-carboxamide C7 H6 N6 O2 ICLVJVGNXROVLL-UHFFFAOYSA-N | |||
SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | K [auth A], L [auth A], M [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NI Query on NI | G [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 72.213 | α = 90 |
b = 72.213 | β = 90 |
c = 152.078 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
REFMAC | phasing |