Download MendeleyStructure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)
Peng, Q., Peng, R., Qi, J., Gao, G.F., Shi, Y.To be published.
6KUU
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)
- PDB DOI: https://doi.org/10.2210/pdb6KUU/pdb
- Entry: 6KUU supersedes: 6ABG
- EM Map EMD-9582: EMDB EMDataResource
- NAKB: 6KUU
- Classification: VIRAL PROTEIN/RNA
- Organism(s): Influenza D virus (D/swine/Oklahoma/1334/2011), synthetic construct
- Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
- Mutation(s): No
- Deposited: 2019-09-02 Released: 2019-12-11
- Funding Organization(s): Chinese Academy of Sciences
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 4.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase 3 | 710 | Influenza D virus (D/swine/Oklahoma/1334/2011) | Mutation(s): 0 Gene Names: P3 |  | |
UniProt | |||||
Find proteins for K9LHJ4 (Influenza D virus) Explore K9LHJ4 Go to UniProtKB: K9LHJ4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K9LHJ4 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA-directed RNA polymerase catalytic subunit | 753 | Influenza D virus (D/swine/Oklahoma/1334/2011) | Mutation(s): 0 Gene Names: PB1 EC: 2.7.7.48 |  | |
UniProt | |||||
Find proteins for K9LH03 (Influenza D virus) Explore K9LH03 Go to UniProtKB: K9LH03 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K9LH03 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase PB2 | 772 | Influenza D virus (D/swine/Oklahoma/1334/2011) | Mutation(s): 0 Gene Names: PB2 |  | |
UniProt | |||||
Find proteins for K9LHF3 (Influenza D virus) Explore K9LHF3 Go to UniProtKB: K9LHF3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K9LHF3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 3'-vRNA | D [auth R] | 14 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5'-vRNA | E [auth V] | 15 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 4.00 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2019-12-11 Deposition Author(s): Peng, Q., Peng, R., Qi, J., Gao, G.F., Shi, Y.
- This entry supersedes: 6ABG
| Funding Organization | Location | Grant Number |
|---|---|---|
| Chinese Academy of Sciences | China | XDB08020100 |
Revision History (Full details and data files)
- Version 1.0: 2019-12-11
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references
