7CYP

Complex of SARS-CoV-2 spike trimer with its neutralizing antibody HB27


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Double Lock of a Potent Human Therapeutic Monoclonal Antibody against SARS-CoV-2

Wang, X.Zhu, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SARS-CoV-2 Spike glycoproteinA, B, C1208Severe acute respiratory syndrome coronavirus 2Mutation(s): 8 
Gene Names: S2
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC2 
Go to UniProtKB:  P0DTC2
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Light chain of HB27D, F, H110Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Heavy chain of HB27E, G, I119Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChainsChain Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
J, K, L, M, N, O, P, Q
J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
2 N-Glycosylation Oligosaccharides Interaction
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
AA [auth A] , AB [auth C] , BA [auth A] , CA [auth A] , DA [auth A] , EA [auth A] , FA [auth A] , GA [auth A] , 
AA [auth A],  AB [auth C],  BA [auth A],  CA [auth A],  DA [auth A],  EA [auth A],  FA [auth A],  GA [auth A],  HA [auth A],  IA [auth B],  JA [auth B],  KA [auth B],  LA [auth B],  MA [auth B],  NA [auth B],  OA [auth B],  PA [auth B],  QA [auth B],  RA [auth B],  SA [auth C],  TA [auth C],  UA [auth C],  VA [auth C],  WA [auth C],  XA [auth C],  Y [auth A],  YA [auth C],  Z [auth A],  ZA [auth C]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2020-09-04 
  • Released Date: 2021-06-09 
  • Deposition Author(s): Wang, X., Zhu, L.

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-09
    Type: Initial release