Download MendeleyComparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Gordon, D.E., Hiatt, J., Bouhaddou, M., Rezelj, V.V., Ulferts, S., Braberg, H., Jureka, A.S., Obernier, K., Guo, J.Z., Batra, J., Kaake, R.M., Weckstein, A.R., Owens, T.W., Gupta, M., Pourmal, S., Titus, E.W., Cakir, M., Soucheray, M., McGregor, M., Cakir, Z., Jang, G., O'Meara, M.J., Tummino, T.A., Zhang, Z., Foussard, H., Rojc, A., Zhou, Y., Kuchenov, D., Huttenhain, R., Xu, J., Eckhardt, M., Swaney, D.L., Fabius, J.M., Ummadi, M., Tutuncuoglu, B., Rathore, U., Modak, M., Haas, P., Haas, K.M., Naing, Z.Z.C., Pulido, E.H., Shi, Y., Barrio-Hernandez, I., Memon, D., Petsalaki, E., Dunham, A., Marrero, M.C., Burke, D., Koh, C., Vallet, T., Silvas, J.A., Azumaya, C.M., Billesbolle, C., Brilot, A.F., Campbell, M.G., Diallo, A., Dickinson, M.S., Diwanji, D., Herrera, N., Hoppe, N., Kratochvil, H.T., Liu, Y., Merz, G.E., Moritz, M., Nguyen, H.C., Nowotny, C., Puchades, C., Rizo, A.N., Schulze-Gahmen, U., Smith, A.M., Sun, M., Young, I.D., Zhao, J., Asarnow, D., Biel, J., Bowen, A., Braxton, J.R., Chen, J., Chio, C.M., Chio, U.S., Deshpande, I., Doan, L., Faust, B., Flores, S., Jin, M., Kim, K., Lam, V.L., Li, F., Li, J., Li, Y.L., Li, Y., Liu, X., Lo, M., Lopez, K.E., Melo, A.A., Moss 3rd, F.R., Nguyen, P., Paulino, J., Pawar, K.I., Peters, J.K., Pospiech Jr., T.H., Safari, M., Sangwan, S., Schaefer, K., Thomas, P.V., Thwin, A.C., Trenker, R., Tse, E., Tsui, T.K.M., Wang, F., Whitis, N., Yu, Z., Zhang, K., Zhang, Y., Zhou, F., Saltzberg, D., Hodder, A.J., Shun-Shion, A.S., Williams, D.M., White, K.M., Rosales, R., Kehrer, T., Miorin, L., Moreno, E., Patel, A.H., Rihn, S., Khalid, M.M., Vallejo-Gracia, A., Fozouni, P., Simoneau, C.R., Roth, T.L., Wu, D., Karim, M.A., Ghoussaini, M., Dunham, I., Berardi, F., Weigang, S., Chazal, M., Park, J., Logue, J., McGrath, M., Weston, S., Haupt, R., Hastie, C.J., Elliott, M., Brown, F., Burness, K.A., Reid, E., Dorward, M., Johnson, C., Wilkinson, S.G., Geyer, A., Giesel, D.M., Baillie, C., Raggett, S., Leech, H., Toth, R., Goodman, N., Keough, K.C., Lind, A.L., Klesh, R.J., Hemphill, K.R., Carlson-Stevermer, J., Oki, J., Holden, K., Maures, T., Pollard, K.S., Sali, A., Agard, D.A., Cheng, Y., Fraser, J.S., Frost, A., Jura, N., Kortemme, T., Manglik, A., Southworth, D.R., Stroud, R.M., Alessi, D.R., Davies, P., Frieman, M.B., Ideker, T., Abate, C., Jouvenet, N., Kochs, G., Shoichet, B., Ott, M., Palmarini, M., Shokat, K.M., Garcia-Sastre, A., Rassen, J.A., Grosse, R., Rosenberg, O.S., Verba, K.A., Basler, C.F., Vignuzzi, M., Peden, A.A., Beltrao, P., Krogan, N.J.(2020) Science 370
- PubMed: 33060197
- DOI: https://doi.org/10.1126/science.abe9403
- Primary Citation of Related Structures:
7KDT - PubMed Abstract:
The COVID-19 pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a grave threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 and Middle East respiratory syndrome coronavirus (MERS-CoV). Here, we have carried out comparative viral-human protein-protein interaction and viral protein localization analyses for all three viruses. Subsequent functional genetic screening identified host factors that functionally impinge on coronavirus proliferation, including Tom70, a mitochondrial chaperone protein that interacts with both SARS-CoV-1 and SARS-CoV-2 ORF9b, an interaction we structurally characterized using cryo-electron microscopy. Combining genetically validated host factors with both COVID-19 patient genetic data and medical billing records identified molecular mechanisms and potential drug treatments that merit further molecular and clinical study.
Organizational Affiliation:
Quantitative Biosciences Institute (QBI) COVID-19 Research Group (QCRG), San Francisco, CA 94158, USA.
