7O0N

Crystal structure of a ParB E93A mutant from Myxococcus xanthus bound to CDP and monothiophosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

The CTPase activity of ParB determines the size and dynamics of prokaryotic DNA partition complexes.

Osorio, M.Altegoer, F.Das, C.K.Steinchen, W.Panis, G.Connolley, L.Giacomelli, G.Feddersen, H.Corralles-Guerrero, L.Giammarinaro, P.I.Hanssmann, J.Bramkamp, M.Viollier, P.H.Murray, S.Schaefer, L.V.Bange, G.Thanbichler, M.

(2021) Molecular Cell 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ParB family proteinA, B212Myxococcus xanthus DK 1622Mutation(s): 1 
Gene Names: MXAN_7476
UniProt
Find proteins for Q1CVJ4 (Myxococcus xanthus (strain DK1622))
Explore Q1CVJ4 
Go to UniProtKB:  Q1CVJ4
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CDP (Subject of Investigation/LOI)
Query on CDP

Download Ideal Coordinates CCD File 
C [auth A], J [auth B]CYTIDINE-5'-DIPHOSPHATE
C9 H15 N3 O11 P2
ZWIADYZPOWUWEW-XVFCMESISA-N
 Ligand Interaction
TS6 (Subject of Investigation/LOI)
Query on TS6

Download Ideal Coordinates CCD File 
D [auth A], I [auth B]Monothiophosphate
H3 O3 P S
RYYWUUFWQRZTIU-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download Ideal Coordinates CCD File 
F [auth A]DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
G [auth B], H [auth B]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG (Subject of Investigation/LOI)
Query on MG

Download Ideal Coordinates CCD File 
E [auth A], K [auth B]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.12α = 90
b = 80.37β = 90
c = 136.83γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PHASERphasing
XDSdata reduction

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release