7ZJL

Delta SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.

• PDB DOI: https://doi.org/10.2210/pdb7ZJL/pdb
• EM Map EMD-14750: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Severe acute respiratory syndrome coronavirus 2, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2022-04-11 Released: 2023-04-19 
• Deposition Author(s): Pichkur, E.B., Lyukmanova, E.N., Shenkarev, Z.O.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.60 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Delta SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.

Pichkur, E.B., Lyukmanova, E.N., Shenkarev, Z.O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 9-mer - A3B3C3 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 9-mer - A6B3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 516.83 kDa 
• Atom Count: 35,140 
• Modelled Residue Count: 4,551 
• Deposited Residue Count: 4,713 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, B, C	1,130	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 7  Gene Names: S, 2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
REGN10987 Fab homologue (Light chain)	D [auth i], F [auth g], H [auth k]	218	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
REGN10987 Fab homologue (Heavy chain)	E [auth j], G [auth h], I [auth l]	223	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.60 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	crYOLO	3.3.1

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-04-19 
Deposition Author(s): Pichkur, E.B., Lyukmanova, E.N., Shenkarev, Z.O.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-04-19
  Type: Initial release
  
• Version 1.1: 2024-11-20
  Changes: Data collection, Structure summary